Oncorhynchus tshawytscha (Chinook salmon): 112236794
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Entry
112236794 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: macrophage mannose receptor 1
KO
K06560
mannose receptor, C type
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112236794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112236794
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
otw04054
]
112236794
04090 CD molecules [BR:
otw04090
]
112236794
04091 Lectins [BR:
otw04091
]
112236794
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
C-lectin receptors
112236794
Pattern recognition receptors [BR:
otw04054
]
Membrane-bound pattern recognition receptors
C-type lectin receptors
112236794
CD molecules [BR:
otw04090
]
Proteins
112236794
Lectins [BR:
otw04091
]
C-Type lectins
Group 6: Mannose receptor family
112236794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lectin_C
fn2
Xlink
UL45
Ricin_B_lectin
Motif
Other DBs
NCBI-GeneID:
112236794
NCBI-ProteinID:
XP_042163854
LinkDB
All DBs
Position
LG28:41812449..41908658
Genome browser
AA seq
1432 aa
AA seq
DB search
MTTIMITVLMLFIQTTLGAPETDGPFNLFNAESGIRQELARWVSGGRIYYTNNRKCAGVS
GKTEGSTLVYSDCDEKSLLQQWECSNNTLLTLKGQTLYLHINDNNDLVLSRDTGPRSRWT
ISGTTDGPCSRTHRELFTIEGNAFGRPCQFPFLYKDQWYGDCTLVDSSDRRLWCAIETNY
QDNQLWGNCPSKSTEHWHKNPVTGAFYQVNLHSALTWHQAQTSCQQQGADLASITEPLEQ
TYLAGLCGRLPVPLWTGLNALEQDSGWQWISGKPLRYFRWDSGHPLSDPGHICGLVDPGQ
QSYWQSSLCSKKHGYVCQKDPPTSPVPPEVTGFCSSPWIPYAARCYLLQRTKKTWTEAQT
ECRRDGGDLASIHNIEQHSFVMSQLGYVAADELWIGMNDVKTPLLFEWSDQSAVTFTRWE
EAMPMEGNCVLVRGEQGRWATQVCNNQRGFICMKKSTSQPSGDPVDTNPGCKSWTRHGSF
CYFVGPEIKTFDEAKETCKGSQSYLADVSSRLDNAFLISLVGSRPEQHFWIGLSNQNHID
FFSWTNSNRVRYTHWNAQMPGSRQGCVAMTTGTLAGLWDVLSCTNQAKYICKHLAEGAGP
TPEPITPVPPRCHEGWFPVGSRNYCFKFFTGPREDEKTWFEARDFCRVIGGDLLSIHSST
DLQSMHHVHGGTSWIGLSAQDPNAGYAWTDGSPLSFQHWMEGEPNNYNGVESCAEMRNSY
WDEEGSWNDVNCEGYNDWLCEIPKGVTPLPPPTNTIPEYNVTEDGWLEYGGSQYYFNTEV
LAMDNARHYCQQRHGDLVVINGLTENTFLWKKINKEHLENHYIGLTVDLDRSFGWMDGSP
VVFQRWDNNQPDFKNNDENCVVMSSSMGFWHDYNCGTEMRSICERSXVPPVNSTVPPTAP
PTGGCPPEWVRYQSKCYKLIGYRVPCTWLEARSYCQSIGANLASIASRREQVFLTTQMTS
GVTDLWIGLSNLNRDAFVWTDGQAVKYLNLDFIKRLSKMLPSRWHYHGQLYMDMLSSEAS
RCIVMASSSSILGKWEIRSCNDTHGFICQRKVDSGIPVPTPTVLPRGWVKLANDSYKVLP
QNRTWPEARMQCEAEEGQLASTLDELSAAYLDLQALKLQTPLWIGLNRNETQGYFRWMDG
WPLSMDQWAQDEPSRDRPCVYLDVEGTWKTALCNHTYPSVCKQSPAVPPTAPPQYTGECI
QEEQEEITGSNSPWSWLPFRGHCYSFVINHIEWADASTSCTRKGASLVSIEDPEELRFIK
SNLEFLKDSYSSFWIGLYKTHLGQWKWWDQTLLDYMNWAEGQPQDSSYIYGYMLSSDGTW
STATMWDDKPYICKKPKVLPETPPTRVSLKAGQRRVYSGLAVVVVLATMCLMGLTALMLY
KKTGRPLPSFTNPLVFSAGRSTFDNPLYTEPVTEVDPSQLVNHMEAQPMITL
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccatcatgataacagtactgatgctcttcattcaaaccaccctgggggctcct
gaaacagacggtcccttcaacctcttcaatgcagaaagtggcattagacaggagctggca
cgctgggtgtcaggtggacgtatctactacaccaacaacaggaagtgtgctggggtttct
gggaagacagagggtagtacgctggtgtattctgactgtgatgagaagagcctcctccag
cagtgggagtgcagtaacaacacactgctcacactgaaagggcagactctgtacctgcac
atcaacgacaacaatgatctagtgctgtccagagacacggggcctcggagtcgctggacc
atctctggaacaacggacggcccctgctcaaggacccacagagaactttttaccatcgaa
ggaaacgcatttgggcgtccctgtcagtttcctttcctgtacaaagaccaatggtatgga
gactgcaccttggtagactcctctgatagacggctttggtgtgccattgaaacaaactac
caagacaatcaactgtggggcaactgtccatccaaatctacggagcattggcataagaac
ccggtcacaggtgcattctaccaggtgaacctccactctgctctgacctggcaccaggct
cagaccagctgccaacagcagggagcagacttggcctcaatcaccgaacccctcgagcag
acctacttagcaggcctgtgtggtaggctgcctgtgccgctgtggacggggctgaatgct
ctggaacaggacagtgggtggcagtggatcagtggaaagcctctccgctacttccgctgg
gactctggtcatcctctctctgatcctggtcatatctgtggactagtcgacccaggtcag
cagtcctactggcagagctccctgtgctccaagaaacatggctacgtctgtcagaaagac
ccacctacatcccccgttcccccagaagtgacaggtttctgctccagtccgtggattccc
tacgctgccaggtgctacctcctccagcgtaccaagaagacctggacagaggctcagacg
gaatgtcggagggacggaggcgacctggccagcatccacaacattgagcagcacagcttt
gtgatgtcacagctgggatatgtggccgctgacgagctgtggatcgggatgaacgatgtc
aagacgccactactgtttgagtggagcgaccaatccgctgtcaccttcaccaggtgggag
gaagccatgccaatggagggcaactgtgtcctggtcaggggagagcagggcaggtgggct
acccaggtgtgtaacaaccagcgtggcttcatctgtatgaagaaatctacctcccaaccc
tcaggggacccggtggacacgaacccaggctgcaaatcgtggaccaggcacggctccttc
tgctacttcgtgggaccagagatcaagacctttgatgaggccaaagagacatgcaagggc
tcacagtcatatctggcagatgtttctagcaggttggataatgctttcctgatcagcctg
gttgggtccaggccagagcaacacttctggatcggactctccaaccagaaccacatcgac
ttcttcagctggacgaacagcaacagggtcaggtacacccactggaacgcacagatgcca
ggcagtcgacagggttgtgtggccatgacaacagggactctagctggattatgggatgtg
ctgagctgcaccaatcaggcgaagtatatctgtaaacacctggcagaaggagcggggccc
acaccagaaccaatcacacctgtccctcccaggtgccatgagggctggtttcctgtgggg
tctcggaactactgcttcaagttctttacagggcctcgcgaagatgagaagacctggttt
gaggctcgggacttctgcagggtgattggaggagacctactcagcatccacagttctacg
gacctccagtctatgcatcatgtccatggtgggacttcctggatcggtctgagtgctcag
gatcccaacgctggctacgcctggactgatgggtcaccactgtccttccaacactggatg
gagggggaacccaacaactataacggcgtggagtcctgtgctgagatgaggaactcttac
tgggatgaagagggatcctggaacgatgtaaactgtgagggctacaatgactggctgtgt
gagatccctaaaggagtgaccccactacctcctcccaccaacaccatccctgagtataat
gtgacagaggatggctggctggagtatggaggctctcaatattactttaatactgaagtg
ctggccatggacaatgccagacactactgtcagcagaggcatggggaccttgttgttatc
aacggactaacagaaaatacatttctgtggaaaaagatcaataaagagcatcttgaaaac
cattacatcgggctaacagttgatcttgatcgctctttcgggtggatggacggttcccca
gtagtattccagagatgggacaacaaccagccggacttcaagaacaacgatgagaactgt
gttgtcatgtccagctccatgggtttctggcatgactataactgtggcactgaaatgagg
tccatctgtgagaggagtnnggttcccccagtgaacagcaccgtgccccctactgccccc
cccacaggaggctgccccccggaatgggtccgctaccagtctaagtgctacaaattgatt
ggataccgggtgccttgtacctggctcgaggccagatcgtactgccaatccataggagct
aacctggcgtccatcgccagtaggcgggagcaagtgtttctgacaacccagatgacttct
ggtgttactgacctgtggattggactgagtaacttaaaccgggacgcgtttgtctggacc
gatggccaggcagtcaaatacttaaacttggatttcattaagagactgtcgaaaatgttg
ccatcgcgatggcattaccatggtcagttgtacatggatatgctttcctctgaggctagt
cggtgtattgtgatggccagttcctcctccatcttgggaaaatgggaaatcaggtcctgc
aacgacacacacggcttcatctgtcagcgtaaagttgactcaggcatcccagtcccgaca
ccgactgtgttacctagaggctgggtgaagctggccaatgactcctacaaggtgctgccc
cagaacaggacatggcccgaagcccggatgcagtgtgaggctgaggagggccagctggct
agcaccctggatgaactgtcagcagcctacctggacctgcaggctctgaagctgcagaca
ccactgtggattggactcaataggaatgagacgcaaggctacttcaggtggatggatggt
tggcccttgagcatggaccagtgggcccaagacgagcccagcagagaccggccctgtgtc
tacctggatgtggaaggcacatggaagacagccctttgtaaccacacctaccccagtgtg
tgtaagcagtccccagccgtcccgcccacggccccaccccagtacaccggggaatgtatc
caggaggagcaggaggagatcactggtagcaacagcccctggtcctggttgcctttcaga
gggcactgctacagcttcgtcattaaccacattgagtgggccgacgcctccaccagctgt
acacgtaaaggggcgtctctggtgagcatcgaggatcctgaagaacttcgcttcataaag
agcaacctggagtttctgaaagacagctactcctccttctggattggcctgtacaaaaca
cacctaggtcagtggaagtggtgggaccaaacactgctggactacatgaactgggcagag
ggacagcctcaggactcttcctatatctatggatatatgctatcctctgatgggacttgg
agcactgccaccatgtgggatgataaaccatacatctgcaagaagcccaaagttctacca
gaaacaccaccaacacgtgtgtctctgaaggcaggtcagaggcgtgtgtattcaggcctg
gcagtggtggtggtattggctaccatgtgtctgatgggcctcacagccttaatgctctac
aagaagaccggccgtcccctgccctccttcaccaaccccctggtcttcagcgcaggtcgg
agtaccttcgacaaccccctctacacggagcccgtcaccgaggttgaccccagccagctg
gttaaccatatggaggctcagccaatgatcactttgtga
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integrated database retrieval system
