Oncorhynchus tshawytscha (Chinook salmon): 112237004
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Entry
112237004 CDS
T05605
Name
(RefSeq) neurexin-3b-like isoform X1
KO
K07377
neurexin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112237004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112237004
Membrane trafficking [BR:
otw04131
]
Exocytosis
Calcium ion-dependent exocytosis
Others
112237004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
Laminin_G_3
EGF
Syndecan
Motif
Other DBs
NCBI-GeneID:
112237004
NCBI-ProteinID:
XP_042177719
LinkDB
All DBs
Position
LG05:29807238..30299531
Genome browser
AA seq
1718 aa
AA seq
DB search
MHPFSLSQRVLLLLSTLLGLCQGLEFTGSEGQWARYVRWDASTRSELTFQFKTAASDALI
LYFDDGGYCDFLLLTVTDGKLQLCFSVDCAETTVTSEKSVNDSRWHFATVSRHNLRTVLA
LDGQSKADEVRPQRQFMKIVSDLFLGGVPGDIRTSAITLPTVRELPPFKGVITDLNYGNK
VPTLINSQKVRLEMMGLCTENPCENGGHCSMADGEPYCDCSRTGYTGRTCGEAAIQRKPG
LAHLKASESGRNKAREENVATFRGSEYFCYDLSQNPIQSSSDEITLSFKTWQRNGLLLHT
GKSADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNGWHDIKVTRNLRQQSGMGH
AMVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYK
NNDIRLELSRLARIVDPKMKLQGDVVFKCENVATLDPINFESPDSYLSLPKWNTKRMGSI
SFDFRTSEPNGLILFTHGKAQDRRDAAGKKNYKVDFFAVELLDGGLYLLLDMGSGTIKVK
ATQNKVNDGAWHHVDIQRDGRSGIISVDNRRTPFTASGENEILDLEGDLYLGGLPDNRVG
LVLPTELWTAMLNYGYVGCIRDLFIDGRSKNIRAISESQNTTGIRPTCSKVPGKQCDSNP
CKNNGVCKEGWNRFICDCTGTGFWAGTCEREASILSYDGSMYMKVVMPSVMHTEAEDVSL
RFKSQHAFGLLMATNSRDSADTLRLELDSGRVKLTINLDCVRINCNTSKGPEILYAGQKL
NNYDWHSVRVVRRGKNFKLTVDEDMAEGQMAGDHTRLEFHNVETGILTERRFVSSPPPPF
VGHLQGLKFNSMFYIDMCKNGDIDFCELNARFGMRFIIADPVTFKSKGSYLGLATLQAYT
TMHLFFQFKTTSPDGFILFNSGDGNDFIAVELVKGFVHYVFDLGNGPSLLKGNSDSALND
NLWHNVVITRDATNTHTLKVDAKSVTQNVNGAKNLDLKGDLFVAGLGPNMYQNLPKLVVS
REGFQGCLASVDLNGRLPDLINDALFRSGQIERGCEVGFTKADLQGPSTTCQEDSCANMG
VCIQQWENFTCDCTMTSYTGTQCNDPGTTYIFGKGGGLITYTWPNNERPSTRTDRLAVGF
STTIKDGILVRIDSAPRLGDYIMLHITEGKVGVTFNIGTSDISVKEVTMTINDGKYHLVR
FTRNGGNATLQVDNWPINEHFPTGPSDVERYQMANKKIPFNYKRPVEDWLQEKGRQLTIF
NTQATISIGGNDRKRPYQGQLSGLYYNGLKVLNMAAEGHANIKVNGSVRLVGDVPTSRGA
ARTTTSVPPEMSTTFIETTTTLSTTTTRKQRSPPTIQQTTDDIVSSAECSSDDEDLEECD
SGHAGGELVIPVLVEDPIDIPPVSTHSPFIPLPPTLRPVLTIIEATKESLPMATEAGVPC
LSDRGSDDCDDGLDGGGGDDDDDDDDAMVISGFGSGEAFDSSLPPTDDEDFYTTFSLVTD
KILTTSAYEGGYKALAPKWEAKDLRPSKASEAGRTTPTPPLPNLGGTVAEASLPSDGTPP
KLPAGKMDNREVIKPLQPDIVLLPLPTTSFDLDGTKPRGPLITSPMLRTVPATLPTVPVV
RRVPPGASEVIRESSSTTGMVVGIVSAAALCILILLYAMYKYRNRDEGSYQVDETRNYIS
NSAQTNGAVVKDKTPSGGSGAKGASSKRPKDKDKEYYV
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atgcatccctttagtctctcccagcgtgttctcctgctgctcagtactctgctgggcctg
tgccagggtctggagttcacaggctccgagggtcagtgggctcggtatgtccgctgggac
gccagcaccagaagtgagctcaccttccagttcaagacagccgcgtccgatgccctgatc
ctctactttgacgatggcggctactgcgacttcctgctcctcacggtaacggacgggaag
ctccagctctgcttcagtgtcgactgcgccgagaccacggtcacctctgagaaatcggtc
aacgacagccgctggcatttcgctacagtcagccgacacaacctcagaacggtcctagcc
ctggacgggcagagcaaggcggacgaggttcgaccacagcgccagttcatgaagatcgtc
agcgacctcttcctcggaggtgtacccggagacatcaggacctcggccatcaccctgccg
acggttagagagctgccaccgttcaaaggagttatcacagacctgaattacggaaacaag
gttcccacgctgatcaacagtcagaaggtgcgtctggagatgatgggtctctgtacagag
aacccgtgtgagaacggaggccactgctccatggctgatggagaaccgtactgtgactgc
tccagaactggatataccggacggacctgcggtgaagcagccattcagaggaaaccaggc
ttagcacatctgaaagcatctgagtcaggtagaaacaaagcgagagaagagaacgtggcg
acgttccgtggttcggagtacttctgctacgacctgtcccagaaccccatccagtcgtcc
agcgatgagatcacattgtccttcaagacgtggcagaggaacggtctcttactccacacg
gggaagtcggctgactacgtcaacctggccctaaaggacggagcggtgagcctggtcatc
aacctgggctcgggcgccttcgaggccatcgtggagcccgtcaacgggaagttcaacgac
aacggctggcacgacatcaaggtcacacgcaacctcagacagcaatcaggcatgggacac
gctatggtgactatctccgtggatgggatcctcaccacgacagggtatacccaggaagac
tacaccatgctggggtctgatgacttcttctacgtgggtgggagtcctagtacggctgat
ctacctggttctcctgtcagcaacaacttcatgggctgcctgaaagaggtggtctacaag
aataatgacatccgtctagagctctcccgtctggcccgcatcgtagaccccaagatgaag
ctccagggtgacgtggtgtttaagtgtgagaatgtggccaccctggaccctatcaacttt
gagagccccgactcttacctcagcctccccaagtggaacaccaagagaatgggttctatc
tccttcgacttcaggacctcagagcccaacggactcatcctgttcacccacggcaaggcc
caggaccggcgggacgcagcagggaagaagaactacaaagtagacttctttgctgtagag
ctgctggatggaggactgtacctgctgctggacatgggctcaggcactatcaaggtcaaa
gccacccagaacaaggtcaatgatggagcctggcaccacgtggacattcagagggatgga
cgttcaggcatcatctcagtggacaaccgtcgtactccgttcacggccagtggagagaac
gagatcttagacctggagggagacctctacctgggtggtctccctgacaaccgcgtaggc
ctggtgttacctaccgaactgtggacggccatgttgaactacggctatgtgggctgcatc
cgggacctcttcatcgacggacgctccaaaaacattcgggccatctccgagtctcagaac
accaccggcatcaggcccacctgcagtaaagtcccggggaaacagtgtgatagcaatccc
tgtaagaacaacggagtctgtaaggaagggtggaaccggtttatctgcgactgcaccggg
actgggttctgggccggcacgtgtgagagagaggcgtccatcctgagctacgacggcagc
atgtatatgaaagtggtgatgccaagcgtgatgcacactgaggcagaggacgtctccctc
cgcttcaagtcccagcatgcattcgggctcctaatggccactaactctcgggactccgct
gacacactccgtctcgagctggacagcggccgcgtcaaactcacgatcaacctagactgt
gtcaggataaactgtaacaccagcaagggaccagagattctatatgcgggacaaaagctc
aataattatgactggcactccgtcagagtggtccgacgcggtaaaaacttcaaactgaca
gtcgacgaagacatggctgaaggccagatggcaggtgaccacactcgcctggagttccac
aatgtggagacagggattctgacagagagacgtttcgtctcctctccccccccccctttc
gttggacacctgcagggcctgaagttcaacagcatgttctacattgacatgtgtaagaac
ggcgacatcgacttctgcgagctcaacgcccgcttcggcatgcgtttcatcatcgccgac
ccggtgacctttaagtccaagggcagctacctgggcctggccaccttgcaagcctacacc
accatgcacctgttcttccagtttaaaaccacctccccggacggcttcatactgttcaac
agcggagacggaaatgactttatcgctgttgagctggtcaaagggtttgtccactatgtg
ttcgacctggggaacggtcccagtctgttgaaggggaacagtgacagtgccctgaatgac
aacctgtggcacaacgtagttatcaccagggacgccaccaacacacacaccctcaaggtg
gacgccaagtccgtcacgcagaacgtcaacggagccaagaacctcgacctcaaaggggat
ctgtttgtggcagggctggggcctaacatgtaccagaaccttcctaaactagtggtctct
agggaaggtttccagggttgtctggcgtctgtagatctgaacggccgcctgcctgacctc
atcaacgacgccctgttccgctccggacagatcgaacgcggatgtgaagttggtttcacc
aaagccgacctgcaaggacccagcactacctgtcaggaggactcctgtgccaacatgggc
gtttgtattcagcagtgggagaacttcacctgcgactgcaccatgacatcttacacaggg
acgcagtgcaacgaccctggtaccacctatatcttcggtaagggcgggggtctgatcacg
tacacgtggcctaacaacgagaggcccagcacgcgtaccgaccgcctggctgtgggcttc
agcaccaccatcaaggacggcatcctggtccgcatcgacagcgcgccgcgactcggtgac
tacatcatgctacacatcacggaaggcaaggtgggcgtgaccttcaacattggtacgtca
gacatcagtgtgaaggaggtaaccatgacgatcaacgacgggaagtaccacctggtgcgc
ttcaccaggaatgggggcaacgccactctgcaggtggacaactggccaatcaacgaacac
ttccccacaggaccaagcgatgttgagcgctatcaaatggctaataagaaaatcccattc
aattataagaggccggtagaagattggctacaggagaaaggccggcagctcaccatcttc
aacacccaggctaccatctctataggcggtaatgaccgtaaacgtccctaccagggacag
ctgtccggtctctactacaacggcctcaaggtcctcaacatggctgccgaaggccacgcc
aacatcaaggtgaacgggagcgtgcgattggtgggggatgtacccaccagtaggggcgct
gcccgcaccaccacctccgtgccacctgagatgtccaccaccttcatagagactaccacc
actctgtctacgaccaccacgaggaaacagcgctctccacccaccattcagcagacgaca
gatgacatagtatcgtcggcagagtgttccagcgacgacgaggatctggaggagtgtgat
tccggacacgcaggaggggagttagtcatccctgtacttgtagaggatcccatagacatc
cctcctgtctccacccattctcctttcatccccctccccccaaccctccgccccgtcctc
accattatcgaggccaccaaagagtccctgcccatggccactgaggcgggggtaccttgc
ttgtcggaccgaggcagcgatgattgtgatgatggtcttgatggtggtggtggtgatgat
gatgatgatgatgatgatgcaatggtgatatcggggtttggctctggcgaagctttcgac
tctagcctgccccccactgacgatgaagatttttacaccaccttctccctggtaacagat
aagatcttgaccacgtcggcctatgaaggtggctacaaagctctcgcgcccaagtgggag
gccaaggacttgaggcctagcaaagcctcagaggcgggtaggactacacccaccccgcct
ctacccaacctcgggggcactgtagcggaggcatccctcccctcggacggcacgccgccc
aaactgcccgccgggaaaatggacaaccgcgaggtgatcaaacccctacagccagacatt
gtcctgctgcctctgccgaccacgtccttcgacctggacggcaccaagccccgcgggcct
ctcatcacctcgcccatgctacgcacggtgcctgccacgttacccaccgtacccgtcgta
aggcgggtaccccctggggcctcggaggtgatacgagaatccagcagcacaacaggcatg
gtggtgggcatcgtctcggccgcagcactctgcatcctcatcctcctctacgccatgtac
aagtacaggaacagagacgaaggctcctaccaggtagacgagacacggaattacatcagc
aactcggcacagaccaacggcgccgtggtgaaagataaaacgcccagcgggggcagtggt
gccaagggagccagcagcaagagaccgaaagacaaggacaaggaatactatgtatag
DBGET
integrated database retrieval system
