Oncorhynchus tshawytscha (Chinook salmon): 112237185
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Entry
112237185 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: C-myc promoter-binding protein
KO
K20163
DENN domain-containing protein 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112237185
Membrane trafficking [BR:
otw04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
112237185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
DUF2464
PPR_2
PPR_3
Motif
Other DBs
NCBI-GeneID:
112237185
NCBI-ProteinID:
XP_042173964
LinkDB
All DBs
Position
Unknown
AA seq
1985 aa
AA seq
DB search
MEDKGPRVADYFVLAGLTDSSTPLEQEIHFHDVCHKTAKPKPPITDVAVVMRSLGEEVPP
GYTCVESTPSGLSADLNNGSLMAPQIFLCYRRGRDKPPLTDLGVLYEWKERLKQGCHIIQ
TTPSGRPANISSTSSQRIYVTYRRATESQTYAALAVTDICVIIPGKGETPPHTFCKVDKN
LNSSMWGSSVYLCYKKSVAKPNTIAYKAGLFSRYPEEDYESFPLPESVPLFCLPMGATIE
AWPAQTKYPLPVFSTFVLTGSSGEKVYGAAIQFYEPYSQDCLTDQQRSQLGLPGLDHGPS
SPASSPATSPSSPAPGPRALHTNKCICLLSHWPFFDAFRKFLTFLYRYCISGPHTLPIEK
HISHFMHKVPFPSSQRPRILVQLSPHDSLMLSQPVSSPLPLSGGRFSILLQNLGPENAIT
LLVFAVTEHKILVHSLRPAVLTSVTEALVAMIFPFHWPCPYIPLCPLALAGVLSAPCPFI
VGVDSRYFDLYDPPLDVSCVDLDTNTISHNGDKRALTWKILPKKACKNLMNVLNNLYQQL
VDGQQRPDGLLELSMSDCTELACGKSLHSLEMEIQEAFLRFMAAILKGYRSYLRPITQAP
SEKTTDASSLFDLQGFLKSRDRSHQKFYSLMTKTQMFIRFIEECSFVSDKDASLAFFDDC
VDKVDSDKPDETRLIEIDESQRSEHTVFITPPELPHLPDGEEHPLCYSYEGFPVLSLDLF
DPMEGLRPPASRLAARQNCPTSPAPMFRRTKQEIKLSQKLAKKYSSIPQMWSKCLLCHCY
GLWFICLPSYVKVCHSKVRALRTAYDVLRKMQDKKLQPPDEVCYRVLMQLCGQYGQPVLA
VRVLLLRXRVKKAGVQPNAITYGYYNKAVLESTWPSSTRGGYFMWMKLRNVVMGVAQFRQ
ALRKQQPPSTQSPLSDGSDLDAVSHGSLDSSADTNTAEQGPYVPDSIKVDPTDDRRSTGE
QSDLGYNSLSKEEVRRGEPSPLDRDSTQDKDNKKESDCSSLSETESAKSSGDCLPQQDFP
EVNGTFKRHNSGIVRGNCPYDDAACEPKGSTSTDHVAGLLLSSSLNEVGVVETNSLRRRH
LSALEEGGGSRSSGGGGGGGHDWQGVRGCRLSGDNRVGSGSSGTPVLGLGLHQGETDPAR
IADNLGADTKILLGTSFSQTNRPRSLVLGGSEGVGAAGGRTRRCRRRDSPEDGEERDWSD
EDKNNTDAIFDLEDLDLDGPTTESVAKTSQSRKRTVERSASYGGVGVASASRGTVKRTGI
ETGFDPLSLLAAESKSQGDREDDLEVEMDGVATPTGRRQDHLAREIEMYMNHMGSPLNSR
TPSLDLQDPSSPLFLHPPPPLITTPRRASLPHTSPLRTGGLPRSRTHNSPSPSQPARQRL
WSSPPCPRSTPSPQPSPYRERERDRDLGLLSPSLSSSSFALDQLLTPTLDVLKSSMFSAG
KGVAEKASRWYSRLATSYTVPTKDGNCDRLSVSSLGMDPDCSSLLDVDEEGLGDPDGSIT
SPQRNGPGPRRSPRRSPSRRSPPRSRLDSSTHRQTGFPPPDCSDLGSSRYTSSTSVFQNH
AMELLISSCSRCKTCDGLVYDEEIMAGWTADDSNLNTTCPFCGNPFLPFLNVEIRDLRGP
GRFYLKSSPSAEEAVSSSYSVSTGLDTGTSTLSTPCPTTVLSPLSPRITVEGCSGNNRLS
SSRAQCIEIPTERRQGALSPGSAMVRSVSAFDPMEEPTRLNHNVPTSGSLPSRLNEASDP
LSVDMEWRLHHPEPVTVPYLSPLVLWKELESLLENEGDPVITVSAVVDHHPIIYWNLVWS
FRRLDLPSNLPGLILTSEHCNRGSTVPRHWMSEDSKHVLIQILWDNLKLHRDLIQPFYIL
WNTQSVGYPLCRPVSEAERPFGEELLHSVVKSIQRNDVSRPMGQLLQLLGQSLGVKRQRS
LYRDILFLCLVALGKDNIDIDAFDREYKMAYDHLSPNLVKLTHNCDRPPSAGVMECRKTF
GEPYL
NT seq
5958 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaaggggcctcgtgtagcagactacttcgtgctggctggtctgaccgactcc
tccacacctctggagcaggagatccacttccacgatgtctgccacaagacggccaaaccc
aagccgcccatcaccgacgtcgctgtggtgatgcgctcgctgggggaagaggtgcctcct
gggtacacgtgcgtggaatccacgccgtccggcctgtcagctgacctgaacaacggaagt
ctcatggcgccacagatcttcttgtgttacagacgaggacgagacaaaccaccactcact
gacctgggtgttctgtatgagtggaaggagcggttgaagcagggttgccacatcatccag
accacgccctccggacgccctgccaacataagctccacctcctcccagaggatctacgtg
acgtatcgccgcgccacggagagccagacctacgccgccctggccgtcacagacatatgt
gtcatcatccccggcaagggagagacgccaccacacaccttctgcaaggtggacaagaac
ctcaacagcagtatgtggggttcctctgtctatctgtgttacaagaagtctgtggccaaa
cccaacaccatagcctacaaggcaggtctgtttagcaggtatcctgaggaggactatgag
tctttccccctgcctgagtccgtgcctctgttctgtctgcccatgggggccaccatcgaa
gcctggccggcccagaccaaataccccctgcctgtcttctccaccttcgtactgaccgga
tcctctggagagaaggtgtacggtgcagccatccagttctacgagccctactcccaggac
tgtctgaccgaccagcagcgctctcagctgggtctgccggggctggaccacgggccctct
tccccagcctcatccccagccacctccccctccagcccagctccgggccccagagcgcta
cacaccaacaagtgtatctgtttgctgtctcactggcccttctttgacgccttccgcaag
ttcctcaccttcctctatcgatactgcatctctggacctcacaccctgcccatcgagaag
cacatctcccacttcatgcacaaggtcccgttcccctcctctcagaggcccaggatactg
gtgcagctctctcctcacgacagcctgatgttgagccagcctgtgtcatcccctctacca
ctcagtggtggtcggttttccatactgctacagaacctcggtccggagaatgctataacg
ctcctggtgtttgctgtgacagaacataagatcctggtccactctctacggcccgctgtt
ctgaccagtgtcactgaggctctggtggctatgatcttcccattccactggccgtgtccg
tacatccctctgtgcccgctggctctggcaggggtcctctccgccccctgccccttcatt
gtgggggtcgactcacgctactttgacctttacgaccccccgctggacgtcagctgtgtc
gacctcgacacaaacaccatctcccacaacggagataagagggccctgacctggaagatc
ctgccaaagaaagcctgtaaaaacctgatgaatgtgctgaacaatctctaccagcaactg
gtggacggtcagcagcgtcctgatggcctattggagctgagtatgagtgactgtacagag
ctggcctgtgggaagagcctccacagcctggagatggagatacaggaagccttcctcagg
ttcatggcggccatcttgaaaggctaccgctcatacctgagacccatcacccaggccccg
tctgagaagactactgacgcctcctctctctttgacctgcaagggttcctgaagagcaga
gaccggtcccaccagaagttctactccctgatgaccaagactcagatgttcatcagattc
atagaggagtgctccttcgtctcagacaaagacgccagcttggccttcttcgatgactgt
gtggacaaggtggacagcgataagccagatgagaccaggctgatagagattgacgaatca
cagcgcagcgagcacacagtcttcatcacaccccctgaactaccccatctgcctgatgga
gaggagcacccactctgctacagctatgaaggtttcccggtgttgagtcttgatctgttt
gaccccatggaaggcctccgaccccctgcctctcggctggctgcccgacagaactgccca
actagccctgcacccatgttcagacgcaccaaacaggagatcaagttgtctcagaagtta
gccaagaagtactcttccatccctcagatgtggtccaagtgtctgctgtgccactgctac
ggcctgtggttcatctgtctgccgtcctacgtcaaggtgtgccactccaaggtgcgggcg
ctgcgcaccgcctacgatgtcctcaggaagatgcaggacaagaaactacagcctcccgac
gaggtgtgttacagggtcttgatgcagctgtgtggtcagtacggccagccagtcctggcg
gtcagagttcttctgttgagatgaagagtgaagaaggctggagtccaacccaacgccatc
acctacggctactacaacaaggcggtgttagagtctacctggccctccagtaccagagga
ggttacttcatgtggatgaagctgaggaacgtggttatgggtgtggctcagtttagacag
gcgctacgcaaacagcagcctccatccactcagagccctctgtcagatggcagcgacctg
gacgctgtgagtcacggcagcctggatagctctgccgacacgaacacggctgagcagggc
ccctacgtccctgactccatcaaagtagaccccactgacgataggcgtagcacaggtgag
cagtcagacctgggatataactccctctctaaagaagaggtacgtagaggagagcccagc
ccgctggacagggacagcacccaggacaaggacaacaagaaggagagtgactgcagctcc
ttgtcggagacagagagtgctaagagcagtggagactgtctccctcaacaggacttccca
gaggtcaacggtacattcaagcggcataattccggcatcgtccgcggcaactgtccctat
gacgatgcagcctgtgagcccaaggggtcaaccagcacagaccatgtagcaggtctcctg
ttgagctcctctctgaatgaggtaggtgtggttgagaccaacagtctgaggaggagacat
ctcagtgcccttgaggagggaggtggcagtaggagtagtggtggaggaggaggaggaggc
catgactggcagggtgtgcgagggtgcagactgagtggagacaacagggttggcagtggt
agcagtggcacgccagtgttgggtctgggactgcaccagggagagactgacccagccagg
atagcagataacctgggggcagacaccaagatcctcctggggaccagcttcagccagacc
aacaggccacggtcgttagtcctgggagggtcagagggggttggagcagccgggggaaga
accaggcgctgcagacgtagagacagccctgaagacggagaggagagggactggagtgac
gaggacaagaataatacagacgccatctttgatctggaggacctagatcttgacggacca
accacagagagcgttgctaaaaccagccaatcacggaagaggacggtggaacgcagcgcc
agctatggcggtgtgggtgtggcctcagcctcgcggggcaccgttaaacgaacggggatc
gagacaggcttcgacccgctgtccctcctggcggccgagtccaagtcccagggagacaga
gaggacgacctggaagtggagatggatggggtcgcgacccctacgggccggcgccaggac
cacctggctagggagatagagatgtacatgaaccatatgggttctccgctgaacagccgg
acacccagtttggacctccaggacccctccagccccctgttcctccaccctcctccccca
cttatcaccacccctcgacgggccagtctcccccatacctcccctctcaggacaggagga
ttacctcgctccaggacccacaactccccctcgccctcccagcctgccagacagaggctc
tggtcctcacccccctgtccccgctccacccccagcccacagcccagcccctaccgggag
agggagagagaccgggacctgggtttgctgtccccgtctctgtcctcctcctccttcgcc
ctggaccagctcctcacccccaccctggatgtgttgaagagcagcatgttctcagcaggg
aaaggtgtggcagagaaggctagccgatggtactctcgcctggccacctcctacaccgtg
cccaccaaggatggtaactgtgaccgtctgagtgtgtcctctctgggcatggaccctgac
tgctcctccctgttggatgtggatgaggagggcctgggggacccagacggctctatcacc
tcccctcagagaaatggccccgggccccgtaggagcccaaggagaagcccatccagacgc
agtcccccgaggagcagactggacagttccacacacagacagacaggctttcctccccca
gactgctctgatctgggctcgtctcgctacaccagcagtaccagtgtcttccagaaccac
gccatggagctgttgatctccagctgttctcgctgtaagacgtgtgacggtctggtgtac
gacgaggagatcatggcaggatggacggctgacgactccaacctcaacaccacctgtccc
ttctgtgggaaccccttcctccccttccttaatgtagagatcagagacctgagaggacct
gggaggttctacctgaagagcagtccgtcagcggaggaggctgtgtcatcgtcctactct
gtgtccaccggtctggacaccgggacgtccactctgtccactccctgtcccactactgtc
ctgtctcctctctcacccaggatcactgtagagggctgctctggtaacaacaggctgtcg
tcgtccagggcccagtgtatagagatccctacagagcggcgtcagggggccctgtccccg
gggtcagctatggtgcggagtgtcagtgcctttgaccccatggaggaaccaactcgactc
aaccacaatgtacccacttcaggcagcctgcccagccgactcaacgaagccagcgacccc
ctgagtgttgatatggagtggcgtctccaccacccagaaccagtcacagtaccctacctg
agtcccctggtgctgtggaaggagctggagtccctgctggagaacgagggagaccctgtt
atcacagtgtcagccgtggtggaccaccatcctatcatctactggaacctggtttggtcc
ttcagacgtctggacctgcccagcaacctgcctggactcatactgacctcagagcactgt
aacaggggatctacggtccctcgccactggatgtcagaggacagtaaacacgtgttgatc
cagatcttatgggacaacctcaagctgcaccgggatctcatccagccgttctacatcctg
tggaacacgcagagtgtgggctacccgttgtgtcgtcctgtgagcgaggcggagcgtccg
tttggggaggagctactccacagcgtggtcaagagcatccagaggaacgacgtctctcga
ccaatgggacagctcctacaactgctggggcagagcctgggggtcaagaggcaaaggagt
ctgtacagagacatcctcttcctgtgtctggtggctctgggaaaggacaacattgacatt
gacgcttttgaccgtgaatacaagatggcgtacgaccacctcagccccaatctggtgaag
ctgacgcacaactgcgaccgtccgcccagcgctggggtcatggagtgtcgcaagaccttc
ggagagccctacctctga
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integrated database retrieval system
