Oncorhynchus tshawytscha (Chinook salmon): 112237229
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Entry
112237229 CDS
T05605
Name
(RefSeq) integrin alpha-V
KO
K06487
integrin alpha V
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04081
Hormone signaling
otw04145
Phagosome
otw04148
Efferocytosis
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04514
Cell adhesion molecule (CAM) interaction
otw04518
Integrin signaling
otw04810
Regulation of actin cytoskeleton
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04081 Hormone signaling
112237229
04512 ECM-receptor interaction
112237229
04514 Cell adhesion molecule (CAM) interaction
112237229
04518 Integrin signaling
112237229
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112237229
04148 Efferocytosis
112237229
09144 Cellular community - eukaryotes
04510 Focal adhesion
112237229
09142 Cell motility
04820 Cytoskeleton in muscle cells
112237229
04810 Regulation of actin cytoskeleton
112237229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112237229
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112237229
04515 Cell adhesion molecules [BR:
otw04515
]
112237229
04090 CD molecules [BR:
otw04090
]
112237229
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
112237229
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
112237229
Exosomal proteins of epithelial cells
112237229
Cell adhesion molecules [BR:
otw04515
]
Integrins
Integrin alpha subunits
112237229
CD molecules [BR:
otw04090
]
Proteins
112237229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
Integrin_alpha
ITGAX-like_Ig_3
LYRIC
Motif
Other DBs
NCBI-GeneID:
112237229
NCBI-ProteinID:
XP_042175957
LinkDB
All DBs
Position
LG03:77333737..77407530
Genome browser
AA seq
1049 aa
AA seq
DB search
MERRRKLGLSLALILSYLQWTTSFNLDIDKPYVFSGPKGSYFGFSVDFFQPNNKQSNILI
GAPRANTSSASTVVERGAVYTCPWQKSSDCTQVQFDNTDDRENIDGVQMEFKSNQWFGAT
VRSDGEHILACAPLYQWSTFSLSEREPVGTCFLKKGGEVVEYSPCRSDGNSPERQGFCQA
GFSIDFVKNNRVVVGGPGSFYWQGQLISDDISEIIARFDNNYYTPYSNQLTTKSASAQYD
DSYLGYSVTVGDFNEDGEDDYVTGVPRGDKALGYVNIFNGRNMESMLNFTGTQMAAYFGH
SVAATDLNNDGLVDLFVGAPLFMDRGSDGKLREVGQVSVFLGKGGFSFHTPITLSGTEIY
SRFGSSIATLGDLDMDGFNDVAIAAPYGGPKHRGLVYIHNGRAAGPDPVPSQVLVGRWAS
SYMPPSFGYSLHGATDIDQNGYPDLIVGVFGADKAVLYRARPVISVNATLDISPQILNPQ
DRNCKLLDHDTPVSCFKVKYCVKASGRSAPASLKFQVDLVLDKHKHKGATKRVLFLHGKT
SRYTKNMTVSNGRGPACEEQEAFLIDDSEFRDKITPISVFMEFSLDYQQAADKTGLLPIL
DQSTPTNISKQAHILLDCGDDNICKPDLKLSVVSDQKEIYIGDDNPLTLEVTAENRGEGA
YEAELHVFIPPQADFTGVVRNSETLSRLSCAYKTENQTRVVVCDLGNPMKGGTKVLAGLR
FSVHQLSEQDTSVEFDLQMKSSNQFNNTSSRVLSITKLAVLAKVDIRGVSAPDQVFLPVA
NWQPKENPVVGDDIGPQILHVYELRNRGPSTFSKAMLDIEWPYRFNNGSLLYITKLEVDG
DGGMNCSTDMEINPLNVSNPLSGEKNITSPSGGGDRTEGRNRNHVHRRELERKEMEGDLE
TLDCSKVQCLKIRCQVGRVERGQSAILYIHSRLGVATFLKAESQNRSFTVRSSASFSVIE
MPYNKNLLPELPSNTTTVSMSVIWVKSEPEPVPWWVVTLALIAGLLLLALLIFVMYKLGF
FERVRPPQEDSAEKEQLAPQENGDRNTDA
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggaaagacgtcgcaaacttggtttatctttggctttgatcctgtcttatttacagtgg
acaacctctttcaatctggatattgacaaaccctatgtattctctggacctaaaggaagt
tattttggattttctgtggattttttccagccaaataataagcagtcaaacattcttata
ggagctcccagagccaacacctcctcagcttccacagtggtggagcgaggggcagtctat
acctgcccatggcagaagagtagtgactgtacccaagtacagtttgacaatactgatgat
cgtgagaatatagacggagtccagatggagttcaagtccaaccagtggtttggagccacg
gtacggtcagatggtgaacacatcctggcctgtgctcctctctaccagtggagcacgttc
agcttatccgagcgagagcctgttggtacgtgtttcctgaagaaaggaggagaggtggtg
gagtattctccctgtcgatctgatggtaactccccagaaaggcaaggattctgtcaggct
ggattcagtattgactttgtcaagaacaacagggtggttgttggaggccctggtagtttc
tattggcaaggtcagctgatcagcgacgacatctctgagatcatcgcccggttcgacaac
aactactacactccttacagtaaccagctgaccaccaagtctgccagcgctcaatacgat
gacagttatttaggttactctgtgaccgtcggagacttcaatgaggatggagaagatgac
tatgttactggggtacccaggggagacaaagctctgggctatgtgaacatcttcaatggg
aggaacatggagtcaatgctgaatttcacaggaacgcagatggctgcctactttggccat
tcagtggcagcgaccgacctcaataatgatgggctggtggatctgtttgtaggggcccct
ctgttcatggaccgtggtagtgatgggaagctgagggaggtgggccaggtgtctgtgttc
ctggggaagggaggcttctccttccacacacccatcacactgagtgggacagagatctac
tcacgcttcggcagttctatcgccacactgggggacctggatatggatggcttcaacgac
gttgccatagctgcaccctacggcgggccgaagcacaggggcctagtgtacatccacaat
gggagggctgcagggcctgacccagtgccttctcaggtcctagtggggaggtgggcctcc
tcttacatgccccccagctttggatactccctgcacggagccaccgatattgaccagaat
ggatacccagacttaatagtgggtgtatttggtgcagacaaagcagttctatacagggcc
cggccggtcatcagtgttaacgccaccctggacatcagccctcagatcctcaacccacag
gataggaactgcaaactgcttgaccatgacacaccagtgtcctgtttcaaagtgaagtac
tgtgtgaaggcgagtgggagaagcgccccagcctcactgaagttccaggttgacctggtg
ttggacaaacacaaacacaagggggcgacaaagagagttctgttcctacacggcaagaca
tcccggtacaccaagaacatgacggtcagcaacggccgaggaccagcctgcgaggagcaa
gaagcctttctcatagacgactctgagttccgggataagatcactcccatctctgtgttc
atggagttcagtctggactaccagcaggcagcagataagaccggcctactgcctatcctg
gaccagtctacgcccaccaacatctccaaacaggcccatatcctactggactgtggagat
gacaacatctgcaagccagacctcaagctgtctgtagtgagtgaccagaaggagatctac
ataggagacgataaccccttgaccctggaggtgaccgcggagaaccgaggagaaggggcg
tacgaggcagagctacatgtcttcattcctccccaggctgacttcaccggggttgtacgc
aacagtgagactctgtctaggttgtcctgcgcctacaagacagagaatcagaccagggtg
gtggtgtgtgacctggggaaccccatgaaaggaggaactaaagtgctggccggactacgt
ttcagcgttcaccagctctcagagcaggacacgtctgtggagtttgacctgcagatgaag
agttccaaccagttcaacaacaccagcagccgggtcctcagcatcacaaagctggctgtc
cttgccaaggtggatatcagaggggtgtccgccccagaccaggtcttcctgcctgttgct
aactggcagcctaaagagaaccctgtcgtaggagacgacatcggcccacagatactgcac
gtctatgagttacgtaacagaggtcccagtaccttcagcaaggccatgctggacatcgag
tggccctacaggttcaacaacggctctctgctctacatcactaaactagaggtggatgga
gacggaggcatgaactgcagtacagacatggagatcaacccactcaatgtctcaaaccct
ctatctggagagaagaacatcacctctccaagtggaggaggagacaggacagagggaagg
aacaggaaccatgttcaccgcagagagctggagaggaaggagatggagggagacctggaa
actctggactgttccaaggtccagtgtctgaagatccggtgtcaggtgggccgtgtggag
agaggtcagagtgctatcctctacatccactccaggctgggggtggccaccttcctcaag
gctgagagccagaaccggtcgttcaccgtgagatcctccgcttccttcagcgtcatagag
atgccttataacaagaacctgttgcctgagctgccctcaaacactactacggtgagtatg
tcagtgatctgggtgaaatcagaacctgaaccggtcccttggtgggtggtgaccttggcc
ctgatcgctggactactgctactggctctgcttatcttcgtcatgtacaagctgggtttc
ttcgagcgtgtacgccccccacaggaagacagcgcggagaaggagcagctggcaccgcag
gagaatggtgacaggaacaccgacgcttga
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integrated database retrieval system
