Oncorhynchus tshawytscha (Chinook salmon): 112237240
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Entry
112237240 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04120
Ubiquitin mediated proteolysis
otw04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112237240
04120 Ubiquitin mediated proteolysis
112237240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112237240
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112237240
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112237240
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
FANCL_C
Motif
Other DBs
NCBI-GeneID:
112237240
NCBI-ProteinID:
XP_042159385
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Position
LG21:37635476..37646469
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AA seq
630 aa
AA seq
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MVRAGLVTATSLALTGAVIAHAYFLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKIFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVGLFTLLLFIKCFHWLA
EDRVDFMERSPNISWVFHFRVFSLMVLLGILDFLFVNHACHSIITRGASVQLVFGFEYAI
LMTMVLTTFIKYTLHTVHLQSDNPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLLASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASNPNQPPTPAPAQPPAPAAPANAP
VPGPPGNVGPGMMPHFPPGLFPFWGPFPGAAPPAGAPGAPGATDAPGATEAAQTQGAGTS
HSTGASTVGAAPAPGGPMPGFPFPSFPPPPFPSAPWLTMPPPPPFVSSMPPPPPALSTMS
EAELRELEQEGRRGLEARLQCLHNIHTLLDAAMLNIHHYLTTVATLTPPQSETSSAAGEA
SGSSPPSTSAETQENQESDSQSCTAAEPEAVNGATGFSQPDSTTLDNSEDKRDEEEGDGE
EVGEDGEPNPSELRRRRLRKLETTPPPPDH
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgtgcaggcctggtgactgccaccagtctggctctgactggcgctgtgattgcc
catgcctactttctcaaacaccagttctaccccactgtggtctacctcactaagagtagc
cccagtatggcagtgttgtacatccaggcgtttgtgttggtgttcctgttgggaaagttc
atgcgtaaaatcttcttcggacagctgagagctgcggagatggagcatctgatagagcga
tcctggtatgctgtcacagagacgtgtctggcctttaccgtgttccgggatgacttctct
ccccgcttcgtaggcctcttcaccctgctgctcttcatcaagtgcttccactggctggct
gaggacagggtggactttatggagagaagtcctaatatatcctgggtcttccacttcagg
gtgttctctctcatggtgttgctgggaatcctggacttcctgtttgttaaccatgcctgt
cacagtatcatcacccgaggggcctctgtccaactagtctttggatttgagtatgccatc
ctgatgacaatggtgctcaccaccttcatcaagtacaccctccacactgttcacctccag
agtgacaacccctgggacaacaaagcagtctacatgctctacaccgagctcttcactggt
ttcatcaaggtcctcctgtacatggcgttcatgaccatcatgataaaggtgcacaccttc
cccctattcgccatccggcccatgtacctggctatgaggcagttcaagaaagcagtaaca
gatgccataatgtcccggcgagccatccgcaacatgaatacactttacccagatgccact
cctgaagatctgctggcttcagacaacgtatgtatcatctgtcgtgaagagatggtgact
ggagccaagaaacttccctgcaaccatatctttcactctagttgccttcgctcctggttc
cagagacaacagacgtgtcctacatgtcgtatggatgtcctccgggcctctaaccccaac
cagcctcccaccccagcgcctgcccagcctcctgccccggcagcacctgccaacgcccct
gtccctggtccacctgggaacgttggccctggaatgatgccccacttccccccagggctg
tttcctttctggggccccttccctggagcggccccccctgctggtgctcccggtgcccca
ggggccacagacgcccctggggccacagaggcggctcagactcagggcgctggtaccagt
cattccacaggggccagtacagtcggtgctgctcctgctccaggaggcccaatgcctggg
ttccccttcccctccttcccacccccaccgttcccctcagctccgtggctgactatgcca
ccacctccaccgtttgtgtcatccatgccccctcctcccccggccctgtccaccatgtca
gaggctgagctgagggagctggagcaggagggccgtagaggcctggaggccagactgcag
tgtctccacaacatccacactctactggacgctgccatgctcaacatccaccactacctc
actaccgtcgccacgctcactcctcctcagtcagaaaccagcagcgctgctggagaggcc
agcggatcatctcctccctccactagtgcagaaacccaggagaaccaggagagtgactct
cagagctgtacagccgctgaacctgaagctgtgaacggggccacaggtttctcccagcca
gactctaccacgttggacaacagtgaagacaagcgggatgaagaggaaggagatggagag
gaagtcggcgaagacggagagcccaacccttcagagctgaggcgccgtcgtctccgcaaa
ctcgagaccacaccccctcctcctgaccactga
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