Oncorhynchus tshawytscha (Chinook salmon): 112237274
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Entry
112237274 CDS
T05605
Name
(RefSeq) potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like
KO
K04957
hyperpolarization activated cyclic nucleotide-gated potassium channel 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112237274
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
112237274
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GFIT
Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
112237274
NCBI-ProteinID:
XP_042157818
UniProt:
A0A8C8F2R9
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Position
LG19:53341133..53376781
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AA seq
1269 aa
AA seq
DB search
MDTFHSSMRKRLYSLPQNIGQKGSVSVMVDDGGEYGGGDKDTKKKRTGIRLKSLPPPGPS
SPTSSWKSNGDRDPKSGTAGDLETDVAIKTNLNGDCRLVRGRLSSITGRHTLGSDPAEQR
RLISEADTGANEESYPGGGELGEHGAGGRSASAHRRSSVFDESTFIKLEGTEPIMSDEAE
QLYRAGFMHRQFGAMLQPGVNKFSLRMLGSERAVEHERERVKSAGFWIIHPYSDFRFYWD
LIMLFLMVGNLIIIPVGITFFKDEHTPPWIVFNVISDTLFLIDLVLNFRTGIVKEDNTEI
ILDPQTIKIKYLKSWFMVDFISSIPVDYIFLIVETRIDSDFYKTARALRIVRFTKILSLL
RLLRLSRLIRYIHQWEEVFHMTYDLASAMVRIVNLIAMMLLLCHWDGCLQFLVPMLQEFP
SDCWVTRNKMVNDTWGQQYSYALFKAMSHMLCIGYGMYPPVGLVDVWLTILSMIVGATCY
AMFVGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPASMRQRVHDYYEHRFQGKMFDE
ESILGELNEPLREEIVNFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPMDSVVMEG
TVGRKMYFIQHGVVCVIAKGNKETKLSDGSYFGEICLLTRGRRTASVRAETYCRLYSLSV
DNFNQVLEEYPMMRRAFETVALDRLDRIGKRNSVLQHKVTQNSGAVNLLENAIIQRIVQQ
DRDMAIQSNISPLSLDPDAPSPTSTPGVIWAPLVQGPLQTAAATTSLALAFSHSHLHAQL
PPILFHRPLSVSESFKDPRGHRLQRGMFVGVSSGCGSGAASPDGSVMFRSGVDTPILASL
RAQHLVSTASSMYPLSPLTSMYQPTSSITSTDSQAQPSRASPFPLGQASIREYPPSSSSS
STSTCMAQLQHHHPYGPPGSHQQEASGRPTMGMPRYPAHSAPSGSTLSPLICSPVSPILS
QLQNSHTTSAQQQQQHVKMGPGHQERAGHLLLPHCPYTTTSPSNPTQHHSSSGFLSISIP
EQASVGGVGGVGGIGGVGGVGVQSSLVHHSLAGLHPGLHPSLLPQVLPEHSAHSSHFALA
SLAQYGSGDGSPACTPPVTHSPTIQSPLTGRTVLQLHSQLHSQLHSQPSSANGSHSSLTP
QTSCPPQVDGRGQRAESLVDLFTQDVRTISTVSTSGSHTYLPQEGALSIPPLSISSGGLG
SSLPMVGGSSNKWYSPTPGHATPLSHYTPMGSEPPTAVSQEAPNSSHPNRSRPVTSGAEY
TVSNLPSNL
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggatacgtttcattcatccatgcgcaaaaggctgtacagcttgccgcaaaacattggt
caaaaaggctctgtatctgtgatggttgacgacggaggagaatacggtggtggcgacaag
gacaccaagaagaaaagaaccggtatcaggctgaagtctctccctcctcctggaccttca
tcccccaccagcagttggaagagcaacggggaccgggaccccaagagcggaaccgccgga
gacttggaaacggacgttgccatcaagaccaacttgaatggggactgtcgtctggtcaga
ggtcgcctttcctccatcactggccgacacactcttgggtcagatccagctgagcagcgg
aggctgatctccgaggcagacaccggtgctaacgaagagagttaccccggagggggcgag
ctgggagagcatggtgccggcggtcgcagtgctagtgcacatcgccgatcgtccgtcttc
gatgagtccactttcatcaagttagaaggaaccgaaccgatcatgtcagacgaagcagag
cagttgtaccgggcgggcttcatgcaccggcagttcggggcgatgcttcaaccaggagtc
aacaagttctctctgagaatgttggggagcgagagggccgtggaacacgaaagggaacgc
gtcaagtctgcaggattttggatcattcacccatacagtgattttaggttctactgggat
ctgataatgctgttcctcatggtggggaacctcatcatcatccctgtgggcatcaccttc
ttcaaggacgagcacactcccccctggatcgtcttcaacgtcatctcagacaccttgttc
ctcatcgacctcgtcctcaacttccggacgggcatcgtcaaggaggacaacaccgagatc
atcctggacccacagaccatcaagatcaagtatctgaagagctggttcatggtggacttc
atctcgtccataccagtagattacatcttcctcattgtggagaccaggatcgactcagac
ttctacaagacggcccgagcgctgaggatcgtgcggtttacgaagatcttgagtttgttg
aggcttctgaggctgtccagactcattagatatatacaccagtgggaggaggttttccat
atgacctatgacctggccagtgccatggtgaggatcgtgaacctgatagctatgatgctg
ctgttgtgtcactgggatggatgtctgcaattcctggttcccatgctgcaagagttcccc
tctgactgctgggtcaccagaaacaagatggtgaatgacacgtggggccagcagtattcc
tatgccctgttcaaggctatgagtcacatgctgtgtatcgggtacggtatgtaccctcct
gtgggcctggtagacgtttggctcaccatcctcagtatgatcgtgggagccacctgctat
gccatgttcgtaggccatgctaccgctctgatccagtcactggactcatcccgacgtcag
taccaggagaagtataaacaggtggagcagtacatgtccttccacaagcttcctgccagc
atgcggcagcgggtccatgactactacgaacatcgcttccagggcaagatgtttgacgag
gagagcattctgggggagctgaacgaaccgctcagagaggagatcgtcaacttcaactgt
cgtaagctggtggcttcgatgcctctgttcgccaacgccgaccccaactttgtgacgtca
atgctgaccaagctgcgttttgaggtgttccagcccatggatagcgtggttatggaaggg
actgtcggcagaaagatgtacttcatccaacacggggtggtctgcgtcatcgccaagggc
aacaaagagaccaagctgtctgacgggtcctactttggagagatctgcctgctgactcgg
ggcagaagaacggccagtgttcgcgctgagacctactgccggctgtactctctgtctgtg
gacaactttaaccaggtcctggaggagtaccccatgatgagacgggccttcgagaccgtg
gctctggaccggctggaccgcataggaaagaggaactctgtgctccaacacaaagtcacc
cagaactcaggagctgtgaacctcctggagaacgcgatcatccagaggatcgtacaacaa
gaccgggacatggccatccagagcaacatctctcccctgtccctggatcccgacgcccca
tctcccacctccaccccgggggtcatctgggctcccttggtccagggccccctccagacc
gctgcagccaccacctctctggctctggccttctcccactcccatctccacgcccagctc
cctccgatcctctttcaccgtccgctctctgtctccgagtcatttaaggatcctagaggc
caccgtctgcagaggggcatgtttgtgggtgtgtccagtggctgtggctccggggctgcg
tctccggacggttctgtgatgttccgttctggagtggacactccgatattagcctcgctc
agggcgcagcatttagtctccacagcctcctccatgtatcctctgtcacctctgacctcc
atgtaccagcccacctcctccatcacctccaccgactcccaggctcagcccagcagagcc
tctcccttccccctgggccaggcctccatccgggagtatccaccctcctcctcctcctcc
tccacttccacctgcatggcccagctccagcaccaccacccctacggcccaccagggtcc
caccagcaggaggcatcagggaggcccaccatgggcatgccgagatacccagcccactca
gccccctctggttccaccctaagccctctcatctgtagccctgtcagccccatcctgagc
cagctacagaactctcacactaccagcgctcagcagcagcagcagcacgtcaagatggga
cctggtcatcaggagagagcaggccacctcctcctcccccactgtccctacacgaccaca
agccctagcaaccccacccagcaccacagctccagtgggtttctatctatatctatccca
gaacaggccagcgttggaggtgttggaggtgttggaggcattggaggtgttggaggtgtt
ggagtccaatcctccctggtgcatcacagtctggcaggcctccaccccggcctccacccc
agtctcctcccacaggttctcccagagcactctgctcattcttcccactttgccctggcc
tcgctggcccagtacgggtcaggggatggctccccggcctgtaccccaccggtaacacac
agccccaccatccagagcccgctgacaggcaggacggtgcttcagctccacagccagctc
cacagccagctccacagccaaccctccagcgccaatggctctcacagctccctcacccca
cagacatcatgccctccccaggtagatgggagagggcagagggcagagtctctggtggat
ctcttcacgcaggatgtcaggactatctccactgtttccacctcgggctcacacacctat
ctaccccaggaaggggctctctccataccgcctctctccatatcttcaggggggcttggt
tcctctcttcccatggtgggtggtagcagtaataaatggtacagccccaccccaggacac
gccactcctctgagtcactacactcccatgggatctgaacctccaactgccgtgagccaa
gaagcaccgaactcttcgcatcccaaccgcagtcgtcctgttacatccggggcagagtac
acagtctccaatctcccttccaacttgtga
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