Oncorhynchus tshawytscha (Chinook salmon): 112237328
Help
Entry
112237328 CDS
T05605
Name
(RefSeq) lipopolysaccharide-responsive and beige-like anchor protein isoform X1
KO
K24181
lipopolysaccharide-responsive and beige-like anchor protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112237328
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Others
Others
112237328
Endosome - Golgi transport
112237328
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
112237328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4704
Beach
DUF1088
NBCH_WD40
PH_BEACH
Neurobeachin
WD40
Laminin_G_3
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
EIF3I
SUKH_6
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
112237328
NCBI-ProteinID:
XP_042185604
LinkDB
All DBs
Position
LG11:complement(1789858..2128664)
Genome browser
AA seq
2985 aa
AA seq
DB search
MASEETPGAGRPAGQGDGAAAVSLNPGIPIRGIKMKFAVLAGLVEVGEVSNRDIVETVFN
LLVGGQFDLEMNFIIQEKDSIVCMVELLDKCEPTCQAEVWSIFTAILKKSVRNLQACTDT
ALINLVLDRVAHTDSMIADLMVDMLGVLASYSITVKELKLFFSKLQGEKGQWPPHAVKLL
SVLRSMAHRNGPDSFFSFPGKSAAAIALPPIAKWPYQSGFTFHTWLRMDPINNINVDKDK
PYLYCFRTNKGLGYSAHFVGGCLIVTSLKSKGKGFQHCVKYDFKPQKWYMVTIVHVYNRW
KNSEISCYVNGELASYGEITWFVNTSDTFDKCFLGSSETADADRVFCGQMGAVYLFGEAL
SAAQILAIYQLGPGYKGTFKYKAESDLLFAEHHKTLLYDGKLSSCISFSYNPRATDAQLC
LESYPKDNASIFVHSPHALMLQDVKAVVTHSVQSAIHSIGGVQVLFPLFAQLDHLQHTSD
ELDTSVCCTLLSFVMELLKNSVAMQEQVLACKGFLVIGYTLEKSSKVHVTRSVLDIVLAF
ARYLSNLQNGVLLLKQLCDHILFNPAIWIHAPAKVQLVLYTYLSTEFISTVTIYNAIRRV
GTVLQVMHTLKYYYWVVNPQDRSGVTPKGLDGPRPNQKEIHSLRAFLLLFVKQLIMKDYG
VKEDELQSILNYLLTMHEDDNLMDVLQLLVALMSEHHGSMVQAFDQRNGVRAIYKLLASN
SEGIRVQALKVLGYFLKHLPAKRKSEVMLGHGLFSLLNERLMLHSNQFSMTTYNVLFEIL
TEQICTQVIHKQHPDPDSNVKIVNPQVLKVIAALLKNSPLSPESMEVRRVFLSDMIKLFN
NSKDNRRSLLQCSVWQDWMLSLCFINPKSSEEQKVTEMVYAIFRILLYHAIKYEWGGWRV
WVDTLSITHSKVTFEQHKENLARMFRQYQRLGSEGDAAGIRTISGASRDSEILGQLRTNR
DQGEETAPSTVIELTIDPEGVPQNQESPNTTPPSETSTASASTPSPPEREGDRSQRGQAP
ITVSNMLARAEEEEELQQVQNQISEDQRGGAGDRAEATPQETEAKLTGDKVSSKTVEAMA
ETETATDKTDEAAAASTAETDEATRPETKVAKSETSDDAKTSDTDKVVRPQTREKGSETH
SCKAANVLMSEDSLNEPKELELAKRPEEQVSAAISACQEGSVAEVSAVGASVQSVSDQVR
PSSTDDSMEESSFVSAAGGEEEEEEVKTEEVVVEEEKMEEVKAEEIKTEVKTGTEKEEES
VAEVTKSAVESQATPPASVPEESQTQPPKMEEIDLNPSAPGTDPTSTEPARQPLESTTSP
PSTLEAILPAAVGATVSKSDTPQVVAPAEAPSTKEFQPETQQATEAPSTRTDTSPKVATA
TAVEAGKDSAAEGPGSATKTKEIHIARLDVSSVASDTERLALKETSTPEVPQGDAAGASG
GQASESSSSARSTMFRIPEFRWSHMHQRLLTDLLFSIETDVQMWRSHSTKTVMDFVNSSE
NVVFVHNTVHLISQVVDNLIMACGGILPLLSAATSSSHDLENIEPSQGLSVEASVTFLQR
LINLVDVLIFASSLNFTEIEAEKNMSSGGILRQSLRLVCAMAVRNCLECQQQSHFKPSQD
SARGQQAVHSLMGAAKSMPAQSPVDVVTGGMSPIRDMDRLLQEMDINRLRAVVFRDIEDS
KQAQFLALAVVYFISVLMVSKYRDILEPQNDKKLPQRSQSARSADSNAVSGGPDLESSVS
LRRRDSGIGDDHSSVAPSEADTTAQGPDAVSEALSTLSSEVRGHRENPTADARGGKNVKD
ILRSLVSAPADDITVDPSLLPPAFLGAAMGNNPNQFRSFDRSVRVAPKKVGGAPSPGSST
PVPSATAAVAATGTPVNNVAVVSTGDASQSTTAEAAAGSASANLPSVPTLSPMTRDTAPS
MSISERLEHALDKAAPLLREIFVDFAPFLSRTLLGSHGQELLIEGTSLMCMKSSSSVVEL
VMLLCSQEWQNSIQKNAGLAFIELVNEGRLLSHTMKDHLVRVANEAEFILSRQRAEDIHK
HAEFESHCAQYSAEKRDEEKMCDHLIRAAKYRDHVTATQLIQKIVNILTDKHGAWGSSAF
SRPREFWRLDYWEDDLRRRRRFVRNPFGSTHSKATLKAAAEHVVPGINAPEEDILKGKQS
IRSHAMGNQNSESEILLDGDDDTLSSLEEKELENLTGPVNMSTSAQLVAPAVVVKGTLSI
TASELYFEVDEDEASFKTIDPKILTYTEGLHGKWLFTEIRAVFSRRYLLQNTALEIFMAN
RTAVMFNFPDAGTVKKVVQCLPRVGVGTNFGLPQTRRISQASPKQLYKASNMTQRWQRRE
ISNFEYLIFLNTISGRTYNDLNQYPVFPWVITNYDTEDLDLTLPSNYRDLSKPIGALNPK
RAAFFNDRYESWEDDQVPKFHYGTHYSTSSFTQMWLLRIEPFTTMFLNFQGGKFDHADRT
FSSVSRAWRNCQRDTSDVKELTPEFYYLPEMFVNANNYSLGVMEDGTVVSDVELPPWAKT
PEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEATRSLNVFYYLTYEGTINLSSIT
DPMLREAVEAQIRSFGQTPCQLLIEPHPPRSSAMQVSPLMFTEQMQQDVIMVLKFPSNSP
VAHVAANTQPGLAAPAIITVTANRLFAVNKWHGLAGHQGSSVQDQQYQLPVEIDPLIASN
VGTHRRQITDLLDQSIHIHSQCFIITADNRFILLCGFWDKSFRVYSTDSGKLTQIVFGHR
DVVTCLARSESYIGGDCYVLSGSRDATLLLWYWNGKHSSIGENPGTEFVTPRAILTGHDC
EVTCASVCAELGLVISGCREGPCLIHSMNGDLLRTLEGPGGCSQPRLIQSSTEGHAVVYY
DKGHFCFFSINGKLLGHMEVEENIRAMLLSRDGQYLLTGGDGGVLSVWQVHNLKQMFTYP
GCDAGIRSMAMSNDQRCIITGMASGSIVLFYNDFNRWHHEYQTRY
NT seq
8958 nt
NT seq
+upstream
nt +downstream
nt
atggctagcgaggagacgcctggtgctgggcgaccagccgggcaaggtgatggagctgcg
gcggtgtcgctcaaccctgggatcccaatccgaggaatcaaaatgaaattcgctgtcctc
gccggcctggtggaagttggggaagtttccaaccgggacattgtggagaccgtcttcaac
ctgttggtggggggccagtttgacctggagatgaacttcattatccaggagaaggacagc
attgtgtgcatggtggagctgctggacaagtgtgagcccacgtgccaggcggaggtgtgg
agcatcttcacagctatcctgaagaagagcgtgaggaacctgcaggcctgcactgacacg
gccctcatcaacctggtcctggaccgcgtggcccacactgacagcatgatcgcagacctg
atggtggacatgctaggggtgctggccagctacagcatcacagtcaaggagctgaagttg
ttcttcagcaaactgcaaggagagaaaggccaatggcctccccatgcggtgaagctgctg
tctgtcctgaggagcatggcccaccggaacggacctgactccttcttcagcttcccaggg
aagagtgctgctgctatagctctgccccctatagccaaatggccgtaccagagtggattc
accttccacacgtggctccgcatggatccaatcaacaacatcaatgttgacaaggacaag
ccttacctgtactgttttcgcaccaacaaaggtctgggatactctgcacactttgtgggc
ggctgtttgattgtgacctcgttgaagtccaaggggaagggattccagcactgtgtgaaa
tatgacttcaaaccacagaagtggtacatggtgaccatcgttcacgtctacaaccgctgg
aagaacagtgagatcagctgctacgtcaatggagagctcgcctcctacggagaaatcacc
tggttcgtcaacaccagcgacactttcgacaagtgtttcctgggttcgtcagagacggcg
gacgccgaccgtgtgttctgtggtcaaatgggggcggtgtatctgtttggcgaggccctc
agtgcagcccagatcctggccatctaccagctggggcctggttacaagggcacgttcaag
tacaaggctgagagtgacctcctgtttgctgagcaccacaagaccctactgtacgacggc
aagctgtcctcctgcatttccttctcctacaacccccgcgccactgacgctcagctgtgc
ctggagtcctaccccaaggacaatgcctccatcttcgtccactcgccacacgcactcatg
ctgcaggatgtgaaggctgtggtgacccactcggtccagagtgccatccactccatcggg
ggagtgcaggtcctcttccccctgtttgcacagctggatcacctccagcacaccagcgat
gaactggacacctctgtctgttgcactttgctgtcctttgtgatggagctgctgaagaac
tctgtggctatgcaagagcaggtcctggcttgcaagggcttcctggtcatcggttacacc
ctggagaagtcttccaaggtgcatgtgactcggtccgtcctggacatcgtgctggccttc
gcccgttacctcagcaacctgcagaacggcgtcctgctgctcaagcagctgtgtgaccac
atcctgttcaaccctgccatctggatccatgcccctgccaaggtgcaattggtgttgtac
acctacctgtccaccgagttcatcagcacggtgaccatctacaacgccatccgcagggtg
ggcacggtactgcaggtcatgcacacgctcaagtactactactgggtcgtcaacccccag
gaccgcagcggagtcacgcccaagggcctcgacggtccgagacccaatcagaaggagatc
cactctctcagagcctttctgctgctgtttgtgaaacaactcataatgaaggattacgga
gtgaaggaagatgagcttcagagtattctcaactacctgctcaccatgcatgaggacgac
aatctaatggatgtgcttcagctgctggtggctctgatgtcggagcatcacggctccatg
gtgcaggcctttgatcagcgcaacggagtacgggccatttacaagctgctggcttccaac
agtgaaggaatcagagttcaggcactcaaagtcttgggctacttcctcaaacacttgccc
gctaagaggaagtcagaggtcatgctgggtcacgggctcttctccctgctcaacgagcga
ctgatgctccactccaaccagttcagcatgacaacctacaacgtgctcttcgagatcctg
accgagcagatctgcactcaagtgatccataaacagcatccggaccccgactccaatgtg
aagattgtcaacccgcaggtcctgaaggtgatcgctgccctgctgaagaactctcccctc
tccccagagagcatggaggtgcgcagggtcttcctgtcagacatgatcaaactgttcaat
aacagcaaagataacaggaggagcctgctacagtgctcggtgtggcaagattggatgctc
tctctgtgcttcatcaaccccaagagcagcgaggagcaaaaggtcactgagatggtgtac
gccatcttccgcatcctgctctaccacgccatcaagtacgagtggggcggctggcgcgtg
tgggtggacaccctgtccatcacccactccaaggtgacctttgagcagcacaaggagaac
ctggcccgtatgttccgtcagtaccagagactgggctccgagggcgatgcggctggtatc
cggaccatttccggggctagccgagactctgagattctgggccagctccggaccaacagg
gatcagggggaggagactgccccctccaccgtgatcgagctcaccattgacccggagggg
gtcccccagaaccaggagtcccccaacactacccctccctcagaaacctcaacagcatct
gcctccacccccagccctccagagagagaaggagatagaagtcagaggggtcaagcaccc
ataactgtgtccaacatgctggccagagctgaagaagaggaggaactacagcaggtccag
aatcagatctctgaggatcagagaggaggtgctggtgacagagctgaagctactccacag
gagactgaagctaaactcactggggataaagtcagcagtaagactgttgaggccatggct
gagactgagacagccacagacaagactgatgaagctgcagcagctagcacagctgaaaca
gacgaagcgaccaggccagaaacgaaggtggctaaatcagaaacaagcgacgatgctaaa
acatctgataccgacaaagtagtaagacctcaaacgagagagaaggggtcagaaacgcac
agctgcaaagctgccaacgttcttatgtctgaagattccctgaacgaacccaaggaactg
gaactggcaaagcgaccggaggaacaggtctctgctgccatctcggcctgccaggagggc
agcgtggcggaggtgtcagcggtcggggcatctgtccagtcagtcagtgaccaggtccga
cccagctccacagacgacagcatggaggaatcctcttttgtctccgccgctggtggagag
gaggaagaagaggaggtgaagacagaggaggttgtagttgaggaggagaagatggaagag
gttaaagcagaggagatcaagacggaggttaaaactggaacggagaaggaagaggagagt
gttgcagaggtcacaaagtcagcagtggaaagtcaagccacaccacctgcttctgtacct
gaggagagtcagacacaaccccctaaaatggaggagattgaccttaacccgtctgcacca
ggcaccgaccccaccagcacagagccagcacggcagcctttagagtccacaacatcaccc
ccttcaactctggaggccatactaccagcagcagtaggggccactgtctctaaatctgac
accccacaggttgtggcaccagcagaggcccccagcaccaaggagttccagccagaaacc
caacaggccacagaggcccccagcaccaggactgatacctctccgaaggtagccactgct
actgctgtggaggcagggaaagacagtgcagcagagggccctggctctgccaccaagacc
aaagagatccacattgccaggctggatgtgtccagtgtggcctcagacacagagagactg
gctctaaaggagacctccacacctgaagttcctcagggtgacgcagccggtgcctcagga
ggccaggccagcgagagcagctcctccgctcgctccaccatgttccgtattccagagttc
cgttggtctcacatgcaccagcgcctgctcacagacctgctcttctccatcgagactgac
gtgcagatgtggaggagtcactccactaagacggtgatggactttgtgaacagcagtgag
aatgtggtgtttgtccacaacacagtgcaccttatctctcaggtggtggacaacctcatc
atggcctgtggaggcatcctgcccctgctttctgctgccacatcctcctcacatgatctg
gagaacattgagccgtcccagggtctgtcggtggaggcgtcggtcaccttcctgcagcgc
ctcatcaacctggtggatgttctgatcttcgcctcctccctcaacttcaccgagattgag
gctgagaagaacatgtcctctggcggtatcctcagacagagcctccgcctggtgtgtgcc
atggctgtgaggaactgtctggaatgtcagcagcagtctcacttcaagcccagccaggac
agcgctcgtggccagcaagccgtgcacagcctcatgggagccgccaagtccatgcccgcg
cagagccctgttgatgttgtgacaggagggatgtctcccatcagagacatggaccgtctg
ctacaggaaatggacatcaaccgcctcagagccgtggtcttcagagatatcgaggacagt
aagcaggctcagttcttggccctggccgtggtttacttcatctctgttctcatggtgtcc
aagtaccgagacatcctggagccccaaaacgacaagaaactcccccagcgcagccagtct
gccaggagcgcagacagtaatgccgtctctggcggtcccgacctggagagcagtgtgtcc
ctccgtcgccgagactctggcatcggggatgaccatagctccgtggcccccagcgaggcg
gacaccaccgcccaggggcccgacgccgtgtccgaggccctgtccaccctctcctcagag
gtcaggggtcacagagagaaccccacggcggacgccaggggcgggaagaacgtgaaggac
atcctgcgcagcctggtctcggcgcctgctgatgacatcacggtggaccccagccttctg
ccgccggccttcctgggagctgctatgggaaacaatcccaaccagttcagatcctttgac
agaagcgttcgggtggcgcccaagaaggtgggcggggctccgtccccaggctcctccact
cctgtcccatcagccaccgctgccgtggcggctaccgggacaccagtcaacaacgttgcc
gtggtttccacgggcgatgcctcccagagcaccaccgctgaggctgcagccggatcagcc
agcgccaacctgccatctgtccccacgctgtccccaatgacccgggacacagcccccagt
atgagtatctcagagaggctggagcatgctctggataaggctgcacccctactgagagag
atctttgtggactttgcccccttcctctctcgcaccctcctgggtagtcacggacaggag
ctcctcatcgagggcaccagtctgatgtgtatgaagtccagcagttcggtggtagagctg
gtcatgctgctctgttctcaggagtggcagaactctatccagaagaacgccggcttggcc
ttcatcgagctggtcaacgagggcaggctactgagccacaccatgaaggaccacctggtg
cgggtggccaatgaggctgagttcatcctgagccgacagagagccgaggacatccacaaa
cacgctgagtttgagtcccactgtgcccagtactcggctgagaagcgtgatgaggagaag
atgtgcgaccacctgatccgagcggcaaagtaccgcgaccacgtgacagccacccagctc
atccagaagatcgtcaacatcctgacggacaaacacggtgcctggggaagctctgccttc
agccgtcctcgggagttctggcgcctcgactactgggaggacgacttgaggcggcgccgg
cgcttcgtcaggaaccccttcggatccactcactcaaaggccacgctcaaagctgcagcc
gaacacgtggtgcctggcattaatgctccggaggaagatatcctcaaaggcaaacagtcc
atcagaagtcacgcgatgggaaatcagaactctgagagtgagatattgttggatggcgac
gatgacactctatcatccttggaggagaaggaattggagaacctaacaggccctgtaaac
atgagcactagcgctcagctggtcgccccggcggtggtggtgaaaggaacgctgtccatc
actgcgtctgaactctacttcgaggtggatgaagatgaggccagctttaagacgatcgat
ccaaagatcctaacctacacagagggccttcatggtaaatggctgttcacagagatcagg
gctgtcttctccagacgttacttgctacagaacactgctctggagattttcatggccaac
agaactgcggtcatgttcaacttcccagatgcaggcacggtcaagaaggtggtccaatgc
ctccctcgcgtgggggtgggcaccaactttggtctcccacagaccaggcgtatctcccag
gccagtcccaagcagctctacaaggcctccaacatgacccagcgctggcagcgcagagag
atctccaactttgagtacctgatcttcctcaacaccatctctggccgtacgtacaacgac
ctgaatcagtaccccgtcttcccctgggtcatcacgaactacgacactgaagacctggac
ctcactctgcccagcaactacagagacctgtccaagcccattggtgccctgaaccccaag
agggcggcgttcttcaacgaccgctatgaatcctgggaggacgaccaggtgcccaagttc
cactacggaacccactactccacctcctctttcacccagatgtggctcctgcgcatcgaa
cccttcaccaccatgttcctcaacttccagggagggaagtttgaccacgctgaccgcacc
ttctcctccgtgtcccgggcctggaggaactgccagagagacacgtctgacgtcaaggag
ttgaccccagagttctactacctccctgagatgtttgtaaacgccaacaactacagcctg
ggggtgatggaggatgggactgtggtgtctgacgtggagctaccgccctgggccaagacc
cccgaggagtttgtacgcatcaatagactggctctggagagtgagtttgtgtcgtgccag
ctgcaccagtggatcgacctgatctttggctacaagcagcagggtcctgaggccaccagg
tctctcaacgtcttctactacctgacctatgaagggaccataaacctcagctccatcacc
gaccccatgctcagagaggctgtggaggcacagatcaggagttttggacagaccccatgt
cagctgctcatcgagccacacccaccaaggagctccgccatgcaggtgagcccgttgatg
ttcacggagcagatgcagcaggatgtcatcatggtgctgaagttccccagcaactctccc
gtggcccacgtggccgccaacacccagccgggcctcgccgcgcccgccatcatcaccgtc
accgccaaccgcctcttcgccgtcaacaagtggcacggcctggccggtcatcaaggctcc
tctgtgcaggaccagcagtaccaactgcccgtggaaatagaccccctgatagccagtaac
gtggggacccaccgtcgtcagatcacagacctgttggaccagagcattcacatccactct
cagtgtttcatcatcaccgcagacaaccgcttcatcctgctctgtggcttctgggacaag
agcttccgcgtctattccactgactcagggaagctgacccagatagtgtttggtcaccgt
gacgtggtgacgtgtctggccaggtctgagtcgtacatcggaggggactgctacgtccta
tcaggctccagagacgccacgttactgctctggtactggaacggaaaacacagcagcatc
ggagagaaccccggaactgagtttgtgacgcccagagccatcctgacgggtcatgactgt
gaggtgacctgcgccagtgtgtgtgccgagctgggacttgtcatcagtggctgcagagag
ggcccgtgtctgatccattccatgaatggggacctgctgcggaccctggagggcccgggg
ggctgctcgcagccccgtctcatccagtcctctacagagggccacgccgtagtctactac
gacaagggacacttctgcttcttctccatcaacggaaagctgctgggacacatggaggtg
gaggagaacatcagggccatgctgctgagtcgggacggacagtacctgctgacgggggga
gacgggggagttctgtctgtctggcaggttcacaacctcaaacagatgttcacctaccct
ggctgtgacgcaggcatccgctccatggccatgtccaatgaccaaaggtgcatcataacc
ggcatggcgtctggtagtatagtcctgttctacaacgacttcaacaggtggcaccacgag
taccaaaccagatactga
DBGET
integrated database retrieval system
