Oncorhynchus tshawytscha (Chinook salmon): 112237416
Help
Entry
112237416 CDS
T05605
Name
(RefSeq) thrombospondin type-1 domain-containing protein 1
KO
K24433
thrombospondin type-1 domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112237416
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
112237416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THSD1_D3
THSD1_N
THSD1_D2
TSP_1
TSP1_spondin
TSP1_ADAMTS
TSP1_CCN
TSP1_CFP_C
Motif
Other DBs
NCBI-GeneID:
112237416
NCBI-ProteinID:
XP_042167183
LinkDB
All DBs
Position
LG33:49387918..49437430
Genome browser
AA seq
1018 aa
AA seq
DB search
MPQGSTPTPLLLFLLATLGYAMAGLHLWPSVHVALSNSSVFLNYDTADHNASSDIRNMTL
TLVDTETNATLLTRTLPANQSEGRLEFNCSCFLYAGTFRFCLEQIDYATANANANGNANA
SVTDRDWNAVVTTTATWWWSSELQVEWPTFHIAVDRASNQSGSFQVGISTNELFKSCSSG
LGSALFLEVSYLEFNQIGRNSIDKVRARTRHPIKELHSQTVDLLCAFHFTERDFIRVALR
SPHTNQDVKSSGPLYLSRIFSYKLLVDNINSYRSGCEGAISVRLVTPPCALISGKVLLFR
DGGVGSEGKGGTGAGGAGEGGVGAEGPPPSVPLAFNWLTQGENETEFNCSVFDPGRNKYC
FRFVLNFSLSPSPAQTCLVVNRNAESWGVWQAWSVCSVSCGEGVRERVRECLLPSGGGSM
QCTGMVKEQSLCSLEDCTVLPAPSPSLPPPPASFLGGNLVVVAGISLCLAVILATILVTL
WRKLCRTPQCSSVRRGSMHSPGGRKLSDEASICGNSLQRPSLSDSQGGTGPGLAQNERPN
LGCKPLPQPPPLVIPLVQDPDRLSPSGQKVLPPIFGYRLAQQQLKEMKKRGLKEATQLYH
VSQSPVHDTLLEDSPTSTPTQPGFTLPGLGPNPSPLDLQEEDSNLSRFRITAPFPEHRVP
QRSSVTLPDRLSPRVELVLGPPVAGYMREGRGGGGGSSQRRDRTADWVEMVERTGLGGMG
GGGVPSNSYQKNPNCRRTSSFHDTKPPPPPAAPCRPHRERSQTQVGPRTRTLPEGSCRTR
GTLETQNPAYPIPEQSTPDWARPKPRPLWPGDDRRRPWVETGCPLFSSNKPKHAENNNTY
LISDPKHTETNTTTAAMLGSEHLSNPELTLERERRRIGDRREGGEDRGERGGTSGIGGPG
LGPGVGSRGCPAYLTPDRAERAEHNWNRRGPSPIQRNILARKLREAQSCNTASDQQGRHN
QQQQRQRSSTFSVSASEQRKGRCRSLPLSGDSPYGLTEAEQCMLDLDMTSLYLGEDEF
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgccacagggttccacgccgacaccgctgctcctcttcctattggccacgctgggatac
gctatggctggcctccacctgtggccctccgtccatgttgcccttagtaacagcagtgtg
ttcctcaactacgacaccgcagaccacaacgcttcctccgacatccggaacatgacccta
actctggttgacacggaaacgaacgccaccctgctcaccagaaccctgccagccaaccaa
tcagaggggagattagaattcaactgctcctgcttcctgtatgctggaacattccgcttc
tgcctggagcagattgactacgcaaccgccaatgctaacgctaacggtaatgctaatgct
agcgtaacggatagagattggaatgcggttgttactactactgccacctggtggtggagc
tctgagcttcaggtggagtggccaacctttcacattgccgtggaccgagccagcaaccag
tcaggatccttccaggtggggatctcgaccaatgagctgttcaagtcctgctcctctggc
ctcggttccgccctcttcctggaggtcagttacctggagttcaaccagattggtcgaaat
agcatcgacaaggtccgcgcccgcacccggcacccaatcaaagagctgcattctcagacg
gtggatctgttgtgtgcatttcatttcacagaacgagacttcatcagggtggcgctgcgc
tcccctcacacaaaccaggatgtcaagtcatctggccctctctacctctccaggatcttc
tcctataagctactggtggacaacataaactcctacaggtcaggctgtgagggagcgata
tctgtgcgcctggtgacccctccctgtgctctgatcagcggcaaggtcctcttattccgg
gacggaggtgtgggatccgagggaaaggggggcacgggggcggggggagcaggtgaaggg
ggtgtaggggcagagggcccgcccccctccgttccactggcgtttaattggctgacacag
ggggagaacgagacagaattcaactgttcggtctttgacccaggaaggaataaatactgc
ttcagatttgtgctcaacttcagcctctccccgagtccagcacagacctgcctggtggta
aacaggaacgcagagtcatggggtgtgtggcaggcgtggagtgtgtgcagtgtgagctgt
ggagagggggtgagggagagagtgcgagagtgtctgctgccctccggtggtggaagtatg
cagtgcaccggcatggtcaaggaacagtctctctgctcactggaagactgtacagtcctt
cccgctccctctccgtccctcccacctcctccagcctcctttctcggtggtaacctggta
gtcgtggccggtatatcgctatgtctggcggtcatcctagcgaccatcctggtcaccctg
tggcgtaaactctgccggacaccccagtgtagctctgtccgccgcggatcgatgcactca
cctgggggacgtaaactctctgacgaggcctccatctgtgggaacagcctccagagaccc
agcctctccgacagccaggggggcacagggccagggctagcccagaacgaaaggcctaac
ctggggtgcaaacctctgcctcaaccccctcctctggttattcccctggttcaggaccca
gatagactgtctccatcgggacagaaggtgctaccgccaatctttgggtaccgtctggcc
cagcagcagttaaaagagatgaagaagagaggtttaaaggaagccacccagctctatcac
gtctcacagagccctgtccacgacactcttctggaggactcccccacctccactcctacc
cagccagggttcaccctccctgggctcggccccaaccccagccccctggacctccaggaa
gaagattctaatctgagccggtttcgtatcaccgcccctttccccgagcacagggtccca
cagcgcagctcggttactctgccagacagactgagccccagggtggagctcgtcctgggg
cctcccgtggccggatacatgagagaaggtaggggaggaggaggcgggagctcccaacga
cgagaccgcacggcagactgggtggagatggtggagaggacagggttaggagggatgggt
ggaggaggcgttccctccaactcgtaccagaaaaacccaaactgcagacggacatccagc
tttcacgacaccaagcccccacctcccccagcagccccatgtcgcccccacagggagagg
agtcagacccaggtgggtccccgcaccaggaccctccccgaaggcagctgtaggacccga
ggaaccttggagacccagaacccagcctatcccatcccagagcagagcacccctgactgg
gccaggcccaaaccgcgacccctttggcctggggacgacaggagaagaccctgggtggag
actggatgtcctctgttttccagtaacaaacccaaacacgctgaaaacaacaacacctac
ttgatctctgaccctaaacacacagagaccaacactacaacggcggccatgttaggatct
gagcatcttagcaaccctgaactcaccctggagagggagaggcggaggattggtgatcga
agagaaggtggtgaagatagaggagagagaggtgggacttcaggtataggtggaccagga
ttaggaccaggggtggggtctcgtggctgccctgcttacctcaccccggaccgggcagag
cgggcagaacacaactggaaccgtcgaggcccttccccgattcagagaaatatcctggcc
aggaagctgagagaagctcagtcttgcaacactgcctccgaccagcaggggcgccataac
caacagcagcagaggcagcgcagctccacatttagcgtgtctgccagtgaacaaaggaag
gggaggtgtaggtctcttcctctgtctggagactccccctatggactgactgaggcagag
caatgcatgctggatctagatatgacctcgctatacctgggagaggatgagttctga
DBGET
integrated database retrieval system
