Oncorhynchus tshawytscha (Chinook salmon): 112237498
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Entry
112237498 CDS
T05605
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112237498 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112237498 (hdac6)
04131 Membrane trafficking [BR:
otw04131
]
112237498 (hdac6)
03036 Chromosome and associated proteins [BR:
otw03036
]
112237498 (hdac6)
Enzymes [BR:
otw01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
112237498 (hdac6)
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112237498 (hdac6)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
112237498 (hdac6)
Membrane trafficking [BR:
otw04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
112237498 (hdac6)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
112237498 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
112237498
NCBI-ProteinID:
XP_042155756
LinkDB
All DBs
Position
LG16:complement(85835094..85874338)
Genome browser
AA seq
1161 aa
AA seq
DB search
MESVPEPRSVRRSPRMSKSPDNNAAKKESGKTRKKTSNLQETRRRGRMDRSKGEEDIANQ
LNNLDLCNEASATGTGLVFDSMFTHHRCLWDPSHPECPERVSTVMDTVEKQGLLSRCVTV
EARAASNEELHLVHTKEYVDLMRSTQRMDEDQLKTLSDSYDSVYIHPESYSCASLAVGSV
LQLVDKVMTSELRNGFSVARPPGHHAQVDQMNGYCMFNNLAIAARYAQTRHRVERVLIVD
WDVHHGQGIQYIFQEDPSVLYFSVHRYEEGLFWPHLPESDSSAVGTGSGEGYNINLPWNK
IGMKDADYVAAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMSASPQCFSVLTHMLL
GLAQGKLLLVLEGGYNLQSTAEGVCACLRSLLGESCPRLRSPSIPSDSALKSISRSISAL
YPYWTSLQVLEGGPLSDSDPLTPAESSEDFSEELCEERRDSLDLTTGLVYDQRMMEHHNM
WDSHHPELPQRIQRIFSRHDDLGLVSRCLRIPARLALEEELALCHSLEHIAKIKATEGMK
TRDLHRLGDEYNSIFISTESYRSARLAAGACFNAVQAVLTGQVEHSVAIVRPPGHHAEKD
AACGFCFFNTVALTARYAQSISQKPLRVLILDWDVHHGNGTQHIFEEDDSVLYISLHRYE
DGTFFPTSEDAHYNRVGEGKGAGFNVNIPWNGAKMGDAEYLAAFHSVVMPIAREFDPGLV
LVSAGFDAARGDPLGGYQVTPPGYAHLTHLLMGLAAGRVLVILEGGYNLTAISESMSACT
SILLGDPALPLPPLPPPHPNAAVSINKVIRTHSVYWLSLRIQLPESLRLSLPNPKPRGKR
TSKGKKSPRQGNQGGASPGQGSPQTTLQTTLQTTLQTTPQTTPQTTPQTTPQTTPQTTPQ
TTPQTTPQTTPQTTSQTTPQTTPLPSGDRGDLDLDDLTKGLVSLDLNQSTSANPSPASVP
VGGARSKVRLSPMKSPVFKVETEAVPNRPEILQPTPDETETPAVAMAASDPVTKGDQESG
AVEVEGASGYSKEPVFELFCGNQDVDGSTMYVVDPLSWCPHLDSVRPVPVGGIDVFRPCE
DCGTDTENWICLCCYKVYCGRYVNQHMLTHGVSSEHRLVLSFADLSVWCYSCQAYVHNQM
VFEAKNAAHCMKFGEDMPLSN
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggagtctgtgccagagcccaggtctgtcagacgttcccctcgcatgtcaaagtcgccg
gacaacaacgcagccaaaaaggagagcggcaagacccggaagaagacgagcaacctgcag
gagactcggaggagaggaagaatggacagaagtaaaggagaagaggacatagccaatcaa
ctgaacaacctggatctatgtaacgaggcttcagccacagggactggtctggtgtttgac
agcatgttcacacaccatcgctgtctctgggatcccagccacccagaatgcccagagaga
gtgagcactgtaatggacacagtggagaaacagggactgctgtctcgctgtgttacagtg
gaggcgagggctgcgtctaacgaagagctgcacttagttcacacgaaggagtatgtagat
ctgatgaggtccactcagcgtatggacgaagaccagctgaagacgctgtctgactcctat
gactcggtctacatccaccctgagtcatattcgtgtgccagtctggctgtgggctctgtt
ctgcagctggttgataaggtcatgacctcagagctccggaatggattctctgttgctaga
cctccaggccaccacgcccaggtcgaccagatgaatggctactgtatgttcaataatctg
gccatcgcagcgcgctacgcacagacacgtcatcgagtggaacgagttctgatagtggac
tgggatgtgcatcacggccaggggatccagtacattttccaggaggatcccagcgttctg
tacttctcagtccacagatatgaggagggtttgttctggccccatctgcccgagtcagac
agtagtgctgtgggcaccggttctggggagggatacaacatcaacctgccctggaataag
attggaatgaaagatgcagactacgttgccgcattccagcagcttcttttgcctgtagcc
tatgagttccagcctcagcttgtcctggtggcagcaggcttcgactctgtgataggtgat
cccaagggagagatgtctgccagtcctcagtgtttctctgttctgactcacatgctgctg
ggcctggctcaggggaagttgttgctggttctcgagggaggatataaccttcagtccaca
gcagaaggggtgtgtgcctgtctgaggtcactattgggggagtcctgcccccgcttgagg
tcaccatccatcccgagtgacagtgccctgaaatccatctccaggtctatctctgctctg
tacccttactggaccagtctgcaggtactggagggagggcctctatcagacagcgacccc
ctgaccccagcagagagcagtgaggattttagtgaagagctctgtgaggagagaagagac
agcctggacctgaccacgggcctggtgtacgaccagaggatgatggaacatcacaacatg
tgggacagccaccacccagagcttccccagaggatccagcgtatcttctcccgtcacgac
gacctgggcttggtgtcccgttgcctgaggataccggctcgacttgccttagaggaggag
ctggctctgtgccacagcttggagcacatagccaagatcaaggccacagaggggatgaag
acgagggaccttcacagactgggagatgagtacaactctatcttcatcagtactgagagc
tacaggagcgcccggttggccgctggggcctgctttaatgcagtacaggctgttctgacg
ggacaggttgaacatagcgtggccattgtgcgcccccctggtcaccatgccgagaaggac
gctgcctgtgggttctgtttcttcaacaccgtcgccctgactgcccgatacgcccagtcc
atctcccagaagcccctgcgggtcctcatcctggactgggatgttcaccatggcaacgga
acacagcacatcttcgaagaggatgacagtgtcctctacatctccctgcatcgctacgag
gatgggaccttcttccctacttccgaggacgctcactacaacagagtgggcgaggggaaa
ggagcagggttcaacgtcaacatcccctggaacggagccaagatgggcgacgcggagtac
cttgcagccttccactcagtggtcatgcccatcgctagagagtttgacccgggcctggtt
ctggtatcggcagggtttgatgcagccagaggggaccctctaggagggtaccaagtgacc
cccccgggctatgcccacctcacccacctcctgatgggcctggcagccggcagagtattg
gtcatcctggagggtggttataacctgactgccatttcggagtctatgtctgcctgcacc
agcattctcctgggagaccccgctctgcccctgcctcccttgcccccacctcaccccaac
gcagcagtcagcatcaacaaggtcatacgcacccactccgtctattggctgtctctcagg
atacaacttccagagtctctccgtctgtctttgccaaaccccaaaccccgagggaagagg
acttctaagggcaagaagtctcccagacagggtaaccagggcggggcaagccctggtcag
gggtcacctcagaccacacttcagaccacacttcagaccacacttcagaccacacctcag
accacacctcagaccacacctcagaccacacctcagaccacacctcagaccacacctcag
accacacctcagaccacacctcagaccacacctcagaccacatctcagaccacacctcag
accacacctctgccctctggtgatcggggcgaccttgacctagatgacctcacaaaggga
ctggtgtcactcgacctaaaccaaagtacctcagccaatcccagcccagcgtctgtccct
gtgggtggagccaggtcgaaggtgaggctcagtcctatgaagagccctgtttttaaggtt
gagacggaagctgttccaaataggcccgagattctccaaccaacgcctgacgagacagag
acgccggcggtcgccatggctgcctcagacccagttaccaagggagaccaggagagcggt
gcggtggaggtggaaggggcgtctggttactccaaggagccggtgtttgagctgttctgt
ggaaaccaggatgtggacgggagcaccatgtacgtggtggatcccctgtcctggtgcccc
cacctagactcagtgaggcctgttcctgttggaggaatagatgtgtttcggccctgtgag
gactgtggaaccgacactgagaactggatctgtctctgctgctacaaggtgtactgtggt
cgctatgtcaaccagcacatgttaacccacggcgtgtcgtcagaacaccggctggtgctg
agcttcgctgacctgtcggtctggtgttactcctgtcaggcctacgtccacaaccagatg
gtgtttgaagccaagaacgctgcccactgtatgaagtttggagaggacatgcccctctct
aactga
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integrated database retrieval system
