Oncorhynchus tshawytscha (Chinook salmon): 112237581
Help
Entry
112237581 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase RNF12-A-like
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112237581
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112237581
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112237581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
zf-RING_UBOX
Prok-RING_4
zf-RING_16
zf-HC5HC2H_2
Glyoxalase
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
112237581
NCBI-ProteinID:
XP_042158963
LinkDB
All DBs
Position
LG21:44563382..44576062
Genome browser
AA seq
947 aa
AA seq
DB search
LDNNLLGTPGEITAEELLSRLQQIKDGPEQQQPSINTSETGEATGEPTEPAEGPEDPSNG
DTLLDWLNTVRRTGNTTRSGHRGNQSWRAVSRTNPNSGDFRFSLEINVNRNLAEQQARAE
GETGEGEAQEEGPAEAPGDGVEAVVGVEVQAGTGAGNGAGTGAGTEAGTGAGTGAGGLRQ
GLRQGLRQGLRQGLRQGLRQGLRQGLRQGLRQGLGQGLGQGLGQGLGRPWRQERCWRNQL
WRRWLSRPALSPPPLLSPDQPVPWYRPPPPPSPPPEEPPRRGQRRARSRSPEQRRTRART
TRSRSPSPWTDWTASPATCPTPPLHTAPHPAPQAPAEGSSRTRQHVLSRQSTAEYEVQSA
GTGSGNAPEPVTTPPQEGEAAGGEGAAGRRPPTIMLDLQVRRVRPGEYRQRDSIANRTRS
RSQNSNNTFLYESERGGFRRTFSRSERAGVRTYVSTIRIPIRRISDAGLGEATSMALQTM
IRQIMTGFGELSYFMDSDSDSSDSNRGGGNPTGAADLAEALNTPDGGVAGMAEGAEPPVS
VGGPSVGGAGEARTEEGEEGVGVGLAPGIGLGVGGTPREGRARPRAPISLEEPGSLPFLR
LAHFFLLNDEDEEQPRGLTKEQIDNLSTRNFGESDALKTCSVCITEYAEGNKLRKLPCSH
EYHVHCIDRWLSENSTCPICRRAVLVSANRESVVLQPRPCGLAVVSVEVRYKRSIPVQVS
HLDHLVLTVKSVPTTSNFYSSVLGMETIIKFADSSDSNRGGGNPTGAADLAEALNTPDGG
VAGMAEGAEHPVSVGEPSVGGAGEARTEEGEEGVGIGLAPGIGLGVGGTPREGRARPRAP
ISLEEPGSLPFLRLAHFFLLNDDDEEQPRGLTKEQIDNLSTRNFGESDALKTCSVCITEY
AEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVSANRESVV
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
ttagacaacaacctgctgggtaccccaggtgagatcacagcagaggagttgttgagtcgg
ctgcagcagattaaagatggaccagagcagcagcagcctagcatcaacaccagtgagact
ggagaagctacaggagaaccgacagaaccggcggaaggtccagaggacccgtctaacggc
gacaccctcttggattggctgaacaccgtcaggcggacaggcaacaccacccgcagtggt
caccgaggcaaccagtcatggcgggcagtgagccggaccaacccaaacagcggagacttc
cggttcagtctggagatcaacgttaaccgtaacctggctgagcagcaggcccgcgcggag
ggggagacgggcgagggggaggctcaggaggaaggcccagcagaagcacctggcgatggg
gtggaggcagtggtcggagtggaggtccaggcagggactggggcagggaatggggcaggg
actggggcagggactgaggcagggactggggcagggactggggcagggggactgaggcag
ggactgaggcagggactgaggcagggactgaggcagggactgaggcagggactgaggcag
ggactgaggcagggactgaggcagggactgaggcagggactggggcagggactggggcag
ggactggggcagggactggggcgcccatggagacaggagaggtgctggaggaaccagttg
tggaggagatggctcagccgcccagccctgtcaccgccacccctcctgtctccagaccag
ccagtcccctggtacaggccgcccccaccccccagcccgccccctgaggagcctccccga
cgtggccagagacgagcccgcagccgtagccctgagcagcgccggaccagggctcgcacc
acacggagccgttccccctcaccctggaccgactggacggcctcccccgccacgtgccca
acaccgccccttcacacagccccccaccctgccccccaggccccggcagagggaagctca
cggactcgacagcatgttctgtcccggcaaagcactgcagagtacgaagtccagtcagcc
ggaacagggtctgggaacgccccagagcccgttaccaccccaccccaggagggagaggcc
gcgggcggggagggagcagcaggacgacgtccccccactatcatgctggacttgcaggtg
cgtcgtgttcgtccaggtgagtaccgccagagggacagcattgctaacagaacccgctca
cgctcccagaactccaacaacaccttcctgtacgagagtgagaggggggggttccgcagg
accttctcccggtctgagcgtgcgggtgtgaggacgtacgtcagcaccatcaggatcccc
atcaggaggatcagtgatgcagggttgggagaggccacctccatggctctgcagaccatg
atacgacagatcatgaccggcttcggagagctcagctacttcatggactcagactctgac
tcctcggactcaaaccgtggcggtggtaaccccactggcgctgccgacctagcagaggcg
ctcaacactcccgacgggggagtagctggtatggcggagggggcggagcctcctgtctca
gtgggtgggcctagtgtgggaggagccggggaggcaaggacagaggagggggaagagggg
gttggtgtaggtctggccccagggataggtttaggggtggggggcacccccagagagggg
cgagctcggccccgtgcccccatcagtctggaggaaccagggtcactacccttcctccgc
cttgctcacttcttcctcctgaatgatgaggatgaggaacagcccagaggactcaccaag
gagcagatcgacaacctctccaccaggaactttggggagagtgatgctctgaagacctgc
agtgtgtgtatcacagagtatgctgaggggaacaagttgaggaagttgccctgttctcat
gagtaccatgttcactgtatcgaccgctggttgtctgagaactccacctgtcctatctgc
cgcagggccgtgttggtgtctgctaaccgggagagtgtggtcctacagcccaggccctgt
gggctggctgtggtgtcggtggaggtgagatataagaggtccatccctgtacaggtgagt
cacctggaccacctggtgttgaccgtgaagagtgttccaaccaccagcaacttctactcc
tctgtcctgggcatggagaccatcattaagtttgctgactcctcggactcaaaccgtggc
ggtggtaaccccactggcgctgccgacctagcagaggcgctcaacactcccgacggggga
gtagctggtatggcggagggggcggagcatcctgtctcagtgggtgagcctagtgtggga
ggagccggggaggcaaggacagaggagggggaagagggggttggtataggtctggcccca
gggataggtttaggggtggggggcacccccagagaggggcgagctcggccccgtgccccc
atcagtctggaggaaccagggtcactacccttcctccgccttgctcacttcttcctcctg
aatgatgatgatgaggaacagcccagaggactcaccaaggagcagatcgacaacctctcc
accaggaactttggggagagtgatgctctgaagacctgcagtgtgtgtatcacagagtat
gctgaggggaacaagttgaggaagttgccctgttctcatgagtaccatgttcactgtatc
gaccgctggttgtctgagaactccacctgtcctatctgccgcagggccgtgttggtgtct
gctaaccgggagagtgtggtctaa
DBGET
integrated database retrieval system
