Oncorhynchus tshawytscha (Chinook salmon): 112237608
Help
Entry
112237608 CDS
T05605
Symbol
hps5
Name
(RefSeq) Hermansky-Pudlak syndrome 5 protein isoform X1
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112237608 (hps5)
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
112237608 (hps5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cytadhesin_P30
Mcl1_mid
Motif
Other DBs
NCBI-GeneID:
112237608
NCBI-ProteinID:
XP_042177638
LinkDB
All DBs
Position
LG01:complement(5532762..5574550)
Genome browser
AA seq
1207 aa
AA seq
DB search
MPMLPVVPEVQSHVLAEFDCLDPLLSALRLDSGRLKCTCLAVSRKWLALGTSAGGLHLIQ
REGWKQRLILTHKEGSITQVSCCPHDEDFIAVATSQGLVVVWELQLERRGRPERVSVSWE
HRGQTLTSLCWDTAALRVFAGDKGGKVSFLRAGSSKLGKGSAFVIFPVQTITTVDSRVVQ
LGYLDGRLLVSSLTRCYLCDTEREKFWRVGNKERDGEYGACFFPLSRGVTAGQPPLLYCA
RPGSRVWEASFSGDVLSTHQFKQLLAVPPAPLISYRSEPHYNRAQKSSQSIAFPRLLYFG
DQNLLTWTDSAIYVFTPQSGQVLLWTEVKDVVELAVYRNELFCLHGDGRMSHLSLLSVER
CVDRLLRREAWSLAATVCVMFQHAIAPSRARKSIPIDRLDHLRSQLSVTTHLDLIGQLEE
VVAKLEPLDSASSSRRSSISSHESFNVLDCGIYRVISRRGSQSDEETSSLVSQSMLEEER
LKEFSFVQEEEEQQGAEHASSACILSSSHPPSLPPSLLPPDPQSGGGLEVTEPSGNHQFH
LPLSFRPKHSRIALQAVRDSVSSFVKKTTEKINTLQMNSDLWPRPPDPKDGGQGHVEAVA
TTVPFPEDGDHEECLDPGNAETDQQDLITATEKGISQIQDPLVLLDPACLKETLQEWIPV
LERVLGPELDLGLGKQSPAGEEEETEDAADNRPENVQSEIPSSSPEGQEEGKRGEDSPQQ
NGGQEDQREAQDHHRPDEASTEENLRVWSPKPLPPDLQAHLTQLATLYLELGYFGDPVVQ
KERGVVGVNAFLRRFFFLLDQERVRRMCLLGYGDQPEVHISFMEAMLELTQSSKVVEVIQ
KGDLLKSLRCLRELQPWSAPMLLAHLHRLYEKHGELAVRSFTQFYPTILPSDVTAMAKHS
HFLAYLDNLVQSRAEEQRLSFLGSLLQPEALRQDWLGLALTHDAPQKSDTLTTDGQPRWH
SHFFSWGYGRLLSLLIRLPADLASKQKMAETCRINGYWTGYVYLCCELQRRTEAFSTICR
LDDMSLLEEPSGMVPQTMDEWKMLLQLSQQCSNSRPSDHIPTPDPNPSLAPTPSLAPTPS
LTPTPSLAPTPSLAPTPSLAPTPSLAPTPSLALASNGTSPSLTNGGSAADHIQTEVTPEN
LVLRLARAVGPDRALEALQEVGMQSDMELGPHSTLVCELLRVAEKRQRALIQTMLERCDR
FLWSQHA
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgcccatgttacctgtagtgcctgaagtccagagtcatgtgctggctgagtttgactgt
ctggaccccctgctctctgcactccgcctggactctggcaggcttaagtgcacctgcctg
gctgtatcgaggaagtggctagctttgggaacgtcagctggagggctgcacctcatccag
agggaaggatggaagcagaggctcatcctcacacacaaggagggatctatcactcaggtg
tcgtgttgtccacacgatgaagactttattgctgtggcaacaagtcagggcctggtggta
gtgtgggagcttcaacttgagcgtcgtggcagaccagagagggtcagtgtttcctgggaa
caccgtggccagacgctcacctctctctgctgggacaccgcagccctcagggtgtttgct
ggggacaaagggggcaaggtgtccttcctccgtgctggatcctccaaactcggaaagggc
tcagcgtttgtgatcttccccgtccagaccatcactactgtggattccagggtggttcag
ctgggttatctggacggacgactgcttgtgtcctctctcacccgctgctacctatgtgac
acggagagggagaagttctggcgtgtcggtaacaaggagcgtgacggggaatacggagcg
tgtttcttccctctgagccgcggcgtgaccgctggccaacctcctctgctgtactgtgcc
aggcctgggtctagagtctgggaggccagcttcagtggagatgtcctcagcacgcaccag
tttaaacagctgctggccgtaccacctgcacctctcatcagctacagaagtgagccccat
tacaaccgagcccagaagagttcccagtccatagccttccccagactgttatactttggg
gatcagaacctgctgacgtggacagactcggctatctatgtcttcactcctcagagtggc
caggtactgctgtggaccgaggtcaaagacgtggttgagttagcggtgtaccgcaacgag
ctgttctgtctccatggtgacggccgcatgtcccacctctcgctgttgtctgtggagcgg
tgtgtcgacaggttgctacgcagggaggcgtggtctctagcggccacggtctgtgtgatg
tttcagcatgcgatcgcccccagcagggccaggaagtcgattcccatcgaccgactggat
cacctgaggtcacagctcagtgtgaccacccacctggatctgattggccagctggaggaa
gtggtcgccaagctggagcctctagactccgcctccagcagtcgcaggagcagcatctcc
tctcatgagagcttcaacgtcctggactgtggcatctaccgtgtcattagccggcgaggc
agccaatcagacgaggaaaccagctcccttgtcagccaatcgatgcttgaggaggagcgg
ctgaaggagtttagctttgttcaggaggaggaggagcagcagggggcggagcatgcatcg
tctgcttgcattctctcatcctcccatcctccatctctccctccatcccttcttcctcca
gatccccagagcggtggtggtttggaggttactgaacccagcggtaaccaccagttccac
ctccccctgtcattccgccccaaacactcccgcatcgccttgcaggccgtcagagacagt
gtctccagttttgtgaagaagactactgagaagatcaacactctccagatgaactctgac
ctttggccacgtccccctgaccctaaggacgggggtcaaggacatgtggaggctgtagct
accactgtaccattcccagaggacggtgaccacgaggagtgtctggacccaggaaatgca
gagacggatcaacaggacctgataacggctacagagaaagggatctctcagatccaggat
cccttggttctgttggacccagcctgtctcaaagaaactctacaggagtggatccctgtg
ttggagagggttctaggtcctgagctggatctaggtctgggaaagcagagtccagctggt
gaggaggaggagacggaagatgctgcagacaaccgtccagagaacgttcagtctgagatc
ccctcgagctctcctgagggccaggaggaagggaagagaggagaggattccccacaacaa
aatggaggacaagaggaccagagagaggctcaggaccatcacagacctgacgaggcctcc
actgaagagaacctgagggtgtggtcccccaaacctctccccccagacctccaggctcac
cttacccagctggccactctgtacctggagctgggttattttggggaccctgttgtccag
aaagagaggggtgtagtaggggtcaatgcattcttgagacggttcttcttccttctggac
caggagcgggtgaggaggatgtgtctactcggctacggggaccagcctgaggtccacatc
tccttcatggaggccatgctagaactaacccagtccagtaaggtggtagaggtgatccag
aaaggagacctgctcaaatctctacgctgtctcagagaactacaaccctggagcgctccg
atgctcctcgctcacctgcacaggttgtatgagaaacatggagagttagcagttcgctcc
ttcacccagttctatcccacaatcctcccctctgacgtcacagccatggccaaacatagc
cacttcctggcttacctagacaaccttgtccaatcacgggccgaggaacaaagactgtca
ttccttgggtccctcctccaaccagaggctctgcgacaggattggctggggctggccctt
acccacgatgcacctcaaaagagcgacacactgaccacagacggacaaccgagatggcac
tcccatttcttcagctggggttatggtcgtctcctatccctcctgatacgccttccagct
gacctggcctccaaacagaagatggctgagacatgcaggatcaacgggtactggactggc
tatgtgtacctgtgctgtgagctccaacgtcgtacagaggctttctctaccatctgtaga
ctggacgacatgagtctgctggaggaacccagtggcatggtgcctcagaccatggatgag
tggaagatgcttctccagctgtctcagcagtgtagtaacagcagaccgtctgaccatatc
ccaaccccagatcccaacccctccttggctcctaccccttccctggctcctaccccttcc
ctgactcctaccccttccctggctcctaccccttccctggctcctaccccttccctggct
cctaccccttccctggctcctaccccttccctggccctagcctccaacgggaccagcccc
agcctgaccaacggtggctctgcagctgaccatatccagacagaggtgactccagagaac
ctggtcttgcgtctggcccgggctgtgggccccgaccgggcccttgaggccctacaggag
gtggggatgcagtcggacatggagctggggccacactccaccctggtctgtgagctgctc
cgtgtggctgagaagagacagagggctctgatccagaccatgctggagcgctgtgatcgc
ttcctctggtcccagcatgcttag
DBGET
integrated database retrieval system
