Oncorhynchus tshawytscha (Chinook salmon): 112237706
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Entry
112237706 CDS
T05605
Name
(RefSeq) spastin isoform X1
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112237706
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112237706
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
112237706
Membrane trafficking [BR:
otw04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
112237706
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
112237706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_22
Vps4_C
AAA_5
TIP49
TniB
Mg_chelatase
IstB_IS21
DUF815
AAA_16
AAA_14
AAA_24
AAA_2
nSTAND3
Bac_DnaA
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
112237706
NCBI-ProteinID:
XP_024262073
LinkDB
All DBs
Position
LG32:5755597..5784584
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AA seq
592 aa
AA seq
DB search
MSSPGGRGSRKKRGPAGSLPDGGDICVQVSLHKRNVYYFFYPLLALFAVLRVLVLNFGVL
FAWLCERMSRAMVARPKQPAADEHANKVCKQDSGEQIRNSHKQAFEYISVALRIDEDDKV
HKEQAVQWYKRGIAELERGIAIKVAENGEKYERDKRLQAKMITNLIMAKDRLELLAKLCS
GPAQRDIYTESSNQSYHNGHLRSVSGAVPKKRDSLTTHSSHSLPRPKHTAKKTLAAGHEG
HQHSPSFSGPSSSLTQHRPAPQSNSNKGKAGCKPTTTPTSMSPLKNRDMKNLKNVDRKLA
NLILSEIIDSGSSVRFKDIAGQELAKQALQEIVILPALRPELFTGLRAPARGLLLFGPPG
NGKTMLAKAVAMESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEIDS
LLCERREGEHDASRRLKTEFLIEFDGVQSGGDERVLVMGATNRPQELDEAVLRRFAKRVY
VALPTEETRLKLVKNLLEKHGNPLAQKELSQLARMTEGYSGSDLTSLAKDASLGPIRELR
PEQVRNMAANEVRNIRFSDFVESLKKIKRSVGPQTLDLYVRWNKDYGDTTGV
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgagttctccgggaggaagaggcagcagaaagaagcgaggccctgcagggtccctaccc
gacggaggggacatctgcgtccaggtgtcactacataaacgaaatgtgtactacttcttc
tacccactgctggcgttgtttgcagtgctccgtgtcctagtcttgaattttggcgtactc
ttcgcctggctgtgcgagcggatgtctcgcgctatggttgcgagacccaaacaaccggca
gcagacgaacatgcgaacaaggtgtgcaagcaggacagcggcgagcagatccgaaacagc
cacaaacaagcattcgagtacatctcagtggctctgagaattgacgaggatgacaaagtg
cacaaggaacaggcagtccagtggtacaaacgcggaatcgcagagctcgagaggggcatc
gcgatcaaggtagcggaaaacggcgagaaatatgaacgtgataaacgtctacaggctaag
atgatcaccaatctgatcatggcaaaggatcgcctggagcttttagcaaagctgtgttca
gggccagctcagagagacatctatacagagagctcaaaccagtcgtaccataacgggcat
ctacgctcagtaagtggagctgtacccaaaaagagggactccctgactactcactccagt
cattccctcccacgaccaaagcatacggcaaaaaaaaccttggcggcaggccacgagggc
caccagcattcccccagcttcagtgggccctccagcagtctcacacagcacagaccggcc
ccccagtccaacagcaacaagggtaaagcgggctgtaaacccaccaccactcccacatct
atgtcgccactgaagaacagggacatgaagaacttgaagaatgtggaccgcaagcttgcc
aacctcatcctcagcgaaatcatagacagtggctcatcagtgaggttcaaggacattgct
ggccaggagctggctaagcaggccctacaggaaatagtcatcctgcctgcactgaggcca
gagttgtttacaggcttgagggctccagcacgaggccttctgctctttggtcctcctggc
aacggaaagacgatgctggctaaagcagtggccatggagtccaacgccacattcttcaac
ataagtgcagccagcttgacctcgaaatatgtgggggagggagagaagctggtgcgagct
ctgtttgccgtcgccagagaactgcaaccctcgatcatcttcatagatgagattgacagt
ctactctgtgagaggagagagggagagcatgatgccagcagacgactcaagactgagttc
ttgattgaatttgatggggtgcagtctggtggggatgagcgggtgttggtgatgggagcc
accaacagacctcaggagctggacgaagctgttcttaggcgatttgcaaaacgggtgtac
gtggctttaccaacagaagagacacggctaaaactggtcaagaaccttttggagaagcac
ggaaatcctctcgcacagaaagaactgtcacagctagccagaatgacagaaggctattct
ggcagtgacctgacctcgctggccaaagatgcgtccctcggtcccatcagagagttgcgt
ccagaacaagtcaggaacatggccgcaaacgaggtgaggaatatcaggttctctgatttc
gtggagtcactgaagaagatcaagaggagtgtcggaccacaaacgctggacctgtatgtg
cgctggaacaaggactatggggacaccactggtgtatga
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