Oncorhynchus tshawytscha (Chinook salmon): 112237764
Help
Entry
112237764 CDS
T05605
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
112237764 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112237764 (tgfbrap1)
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
112237764 (tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
Motif
Other DBs
NCBI-GeneID:
112237764
NCBI-ProteinID:
XP_042171950
LinkDB
All DBs
Position
Unknown
AA seq
874 aa
AA seq
DB search
MSVKAFELVPAVERELLMGDKARINIECIECCGKHLYVGTNDCFIHHFLLEEHATTKGML
SYTVQKLLFKYLGLKKPVEALKAASALERIIVLCDATVSVIDMITLEPVPSGGAKIKGVA
AFCVNENPVNGDPFCVEIGVLSARRRTVQIYMVYEDRVQLVKEVNTPGQPCAVSLDGYFL
CLALSTQYMILNYSTGAAQDLFPYDSEERKPIVKRIGREEFLLAAPGGLGMFANAEGISQ
RAPVNWSESVMGAAVCFPYVVALDEGFVTIHSMLDQQLKQTLSFRDGHILQDFEGKVVLA
STKAVYVLVPLPLERQIQELLAGHRVEEALALTEGVRRNIPKDKFQILHKRILQQAGFIQ
FGQLQFLEAKEHFRTGQLDVRELISLYPLLLPASSSFARCHPPLHGFADLNHLAQGDQDK
VQRCKRFLITYLGEVRSTEGANGCREDVDTALLKLYAEQDHESLLDLLASPNACLLADSA
PWLEKHHKYFALGLLYHYNGQDSAALQLWVQVVNGDLQDSTRSDLYEYIVDFLGFCSNPD
LVWKYADWALQRDQTIGVQIFTRRPVGQDQVKEQKDQVNPDDVITYLGKHSQALLLYLEH
LVLGRRIQKEKLHTHLAVQYTDRVLSLLSQSPPVDQQVSVARDKLQLLLRESSLYRVQLL
LGKIQECDQLFLERATLHGKLEEHDKALHILVHQLKDFPAAEAYCVWCSASRDPAYQQSL
FHLLLGVYLDRDLPSSTVTGELEMAAVDLLNRHGEVFDAVRVLDLLPEGWSLQLLRPFLG
RALRGSMHACRTSQVALGLARSENIQLQHDRLKQRRSPVLVSQKKGCVLCHNTFSEPDCV
CLPGGVPVHTHCAAQRVVRDSPTRRQLANSNNHT
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcatttgagctggtccctgccgtggagcgggagctcctgatgggagac
aaggcccgcatcaacattgagtgcatcgagtgctgcggcaagcacctgtacgtgggcacc
aacgactgcttcatacatcacttcctgctagaggagcatgccacgaccaaggggatgcta
tcctacaccgtccagaagctgctgttcaagtacctgggcctgaaaaagcccgtggaggcc
ctgaaggccgcgtcagcgttagaacgcatcattgtgctctgtgatgctacagttagtgtt
attgacatgatcaccttagaacccgtgccttcgggcggggccaagattaagggcgtggcc
gcgttctgcgtcaacgagaacccggtgaacggggacccgttctgcgtggagatcggggtg
ctctcggcccggcggcgcactgtacagatttacatggtttacgaggacagggtgcagctg
gtgaaagaggtcaacacgccggggcagccgtgtgcggtcagtctggacggttacttcctg
tgcctggccctctccacacagtacatgatccttaactacagcacaggggccgcgcaggac
ctgttcccctatgacagcgaggagaggaagcccatagtcaagaggatcggcagggaggag
ttcctcttggctgcccctggtggcctgggtatgtttgccaatgcagagggtatatcccag
cgtgccccagtgaactggtcagagagtgtgatgggagccgctgtgtgttttccctatgtg
gtggcgctagacgagggcttcgtcaccatccacagtatgctggaccagcagctcaaacag
accctctccttcagagacggacacatcctacaggactttgaaggtaaggtggttctggcc
tccactaaggctgtgtacgtgctggtgcccctacccctggagagacagattcaggagctg
ctagctggacacagagtggaggaggccctggctctgactgagggagtcaggaggaacatt
cccaaagacaagttccagatattgcacaaaagaatcctccagcaagcaggattcatacag
tttggacagcttcagtttctcgaagcgaaagaacacttcaggacaggtcagttggacgtc
cgggagttgatctccctctaccctctcctcctcccggcctcctcctccttcgcccgctgc
cacccgccgctccacgggttcgccgacctcaaccacctggcgcagggggaccaggacaag
gtccagaggtgcaagaggttcctcatcacgtacctgggtgaggtgcgaagcacggagggg
gctaatggctgccgggaggacgtggacacggctctgttgaagctgtacgctgagcaggac
cacgagagtcttctggacctgctggcctcccccaacgcctgtttactggcagacagcgcc
ccctggctagagaaacaccacaagtattttgcactcggcctcctctaccattataacgga
caggattcagctgctctacagttgtgggtgcaggttgtgaatggggaccttcaggactct
accaggtctgacctgtatgagtacattgtggacttcctgggtttctgttccaacccggac
ctggtgtggaaatatgcggactgggccctgcagagagaccagacgataggggtgcagatc
ttcaccaggaggccggtgggtcaggaccaggttaaggagcagaaggaccaggtgaaccca
gacgacgtcatcacgtacctggggaaacacagccaggctctgctgctctacctggaacac
ctggtgctgggccgacggatacagaaagagaagctccacacccacctggcagtgcagtac
acagacagagtcctgtctctcctgtctcagtcccccccagtggaccaacaggtgtctgta
gcccgggacaaactccagctcctcctcagggagtccagcctgtaccgcgtccaactacta
cttggtaagatccaggaatgtgaccagttgtttctggagagagccacgctccacgggaaa
ctagaggagcacgataaggcattacacatcctggtgcaccagctaaaagacttccctgct
gctgaggcctactgcgtgtggtgttccgcctcccgggacccggcctaccagcagagcctc
ttccacctcctcctgggggtctatctggaccgggaccttcccagtagtacggtcaccggg
gagctggagatggcagcggtggatctgttaaaccggcacggggaggtgttcgacgctgtg
cgcgtactggacctgcttcctgaaggctggtccctgcagctgcttcgcccgttcctcgga
cgcgccctgcgggggagtatgcacgcctgccgcacctcccaggttgcactggggctggcg
aggtcagagaacatacagctgcagcacgacaggttgaagcagaggaggagcccagtcctg
gtatcacagaagaaggggtgtgttctgtgccacaacaccttcagcgagccggactgtgtg
tgtcttccaggaggcgtgcccgtacacacacactgtgccgcccagagggtggtacgagac
tcgcccaccaggagacaactagccaatagcaacaaccacacatga
DBGET
integrated database retrieval system
