Oncorhynchus tshawytscha (Chinook salmon): 112237835
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Entry
112237835 CDS
T05605
Symbol
fgd1
Name
(RefSeq) FYVE, RhoGEF and PH domain-containing protein 1 isoform X1
KO
K05720
FYVE, RhoGEF and PH domain containing 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
112237835 (fgd1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112237835 (fgd1)
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
112237835 (fgd1)
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GFIT
Motif
Pfam:
RhoGEF
PH
FYVE
FYVE_2
PH_11
PH_2
zf-RING_5
IBR
Motif
Other DBs
NCBI-GeneID:
112237835
NCBI-ProteinID:
XP_042155764
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Position
LG16:86096796..86221606
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AA seq
1058 aa
AA seq
DB search
MQLNRPKSALVSSFSQSISPETAASIGSFSSQFKTMRFSYHISRSMARPQPPLRRIRPSS
SSPRLMTKSLSLEPGAHGACLGAHDDDSDTQTETPRLSSDPGPQTSGPLGLQPPRALLHP
ALHSCNRGDNRSGTPQEVPSTALKTRPPLPGPKPQVPPKPPHLQSAGAARPRPRAPDKPL
PLPPPCRPLPADPRGGGASHPQTLPRVEGSSSPTACVLSLIEKFEREKIIVVPDITGGGV
CTPWVLETGPGGDTFSPPASELPLGCLPVVWPPGSSQDLQELRDLPQGLAVLVNVLPGET
EVPEDDNENELGTLCSISDKRLSMESGYSASERLTDNMEMREQVGSESESQSEIPSEHLP
LLQPQTDGKLANRDSGIDSISSPSHSEELCFAGDEDRVIYPCSPALTLPRLSSSSSSGYA
EGPGGEGASAEGGRDSEGDSDLEEGSGDETIELINPMMDMLPLALPQTDRQDSTELSVQQ
RVFNIANELLHTEKAYVSRLYLLDQVFCSSLLEEARSRSSFPLDVVMGIFSNICSIYCFH
QQFLLPALEKRMAEWDVNPRIGDILQKLAPFLKMYGEYVKNFDRAMELVNTWMERSSQFK
AIVHQIQREERCGNLTLQHHMLEPVQRIPRYELLLKDYLHRLPDDHDDFQHAQKSLELIA
TAAEHSNTAIRKMERMRKLLKVYELLGGEEDIVNPTNELIKEGHILKLSAKNGTSQDRYL
ILFNDRLLYCVPKLRLIGQKFGVRARINVDGMELKESSSVNVPRTFLVSGKQRSLELQAR
TEEEKKDWIQAIQATIQRHEQTLATFHHLNCSLRDEDYTPPNSPNCSELGKRAPTPIREK
EVTLCMKCQEPFNSITKRRHHCKACGHVVCGKCSEFRARLLYDNNRANRVCIDCYTTLVG
VPPSPASLTCSINRRRSILEKQASVAAENSVMCSFLHHMEKGAGRGWQKAWFVIPENEPL
VLYIYGAPQDVKAQRSVPLIGFEVSLTESCDRLERRFAFKISQSHLTLYFSADGEELQRR
WIEVLSRAGRGEELQAHGSITEALEEEGEETATSGENT
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgcagttgaaccgaccgaagagcgctttagtgtcgagcttcagccagtcgatttcccct
gagacggcagccagtatcggatccttctccagccagttcaaaaccatgcgcttctcctac
cacatcagccgcagcatggcaagaccacaaccgccgctgcgcaggatacgcccatcctcc
tccagtcctcggctgatgactaagagcctatccctggagcctggtgctcacggtgcatgc
ctcggggcccacgacgacgactcagacacccagacagagacccctcgcctaagctcagac
cccggccctcaaacctccgggccactgggtctgcaaccccccagggctctgctgcacccc
gctctacacagctgtaacagaggagacaacaggagtggaactcctcaagaagtgccctcc
accgccctcaagacacgccctcccttacctgggcctaaaccacaagtgcccccaaagcct
cctcacctgcagagtgctggtgctgctagaccacgcccccgcgccccggacaagcccctc
cctctgcctccaccctgtagacctctgcctgcagaccccagagggggaggggccagccat
ccccaaacactcccccgcgttgagggaagctcctcccccaccgcatgcgtgctctccctc
atcgagaaatttgagagggagaagatcattgtggtgcctgatatcacgggagggggtgtc
tgcaccccctgggtcctcgagacgggaccaggaggggacaccttctctcccccagcctca
gagctccctctgggctgtctccctgtggtctggccccctggttcctctcaagacctccag
gagctccgggatctacctcaggggctggctgtgctggttaatgtgttgccgggggagacg
gaggtaccagaggatgacaatgaaaatgaactaggaacgttgtgctctatctctgacaag
cgtctgtccatggagtctggctacagcgcctcggagagactcacggacaacatggagatg
agggagcaggtggggtcagaatcagagagccaatcagagatcccctctgaacacttgccc
ctccttcagccgcagacggacggcaagctggccaatcgggactctggcatcgacagcatc
agctctccgtcccacagcgaggagctgtgtttcgccggcgacgaggaccgggtcatctac
ccatgtagtcccgccctcacgctgccacgcctctctagctcctcctcttccggctatgcc
gagggtccggggggagagggggcatcggctgagggggggagagattcggagggggacagt
gacttggaggaggggagtggggacgagacaattgaactgatcaaccccatgatggatatg
ctgcctctggctctgcctcaaacagacagacaggactctacagagctgtcggtgcagcag
cgtgtgttcaacatagcaaatgagctcctccacacagagaaggcctacgtgtctcggctg
tacctcctggaccaggtgttctgctcctccctcctagaggaggcgcgctcccgctcctcc
ttccctctagacgtggtcatgggtatcttctccaacatctgctctatatactgtttccac
cagcagttcctgctccccgccctggagaaacgcatggcggagtgggatgtgaacccgcgc
atcggggacatcctgcagaagctagcccccttcctaaagatgtacggagagtacgtgaag
aactttgaccgggccatggagctggtcaacacctggatggagaggtcatcccagttcaaa
gccatcgtccaccaaatccagagagaggagcgctgtggtaacctgaccctacagcaccac
atgttggagccggttcagaggatccctcgctacgagctgctgctgaaagactacctgcac
cgtctccctgacgaccatgatgactttcaacatgcacagaaatcactagagttgatcgcc
acagctgccgagcactccaacactgccatcagaaagatggagcgcatgcgtaaactgctg
aaggtgtatgagttgctgggaggagaggaggacatcgttaaccctactaacgaactcatc
aaggagggacacatcctcaaactgtcggctaagaacggcacctcacaggatagatacctc
atcctgttcaatgataggttattgtactgcgtccctaaactgaggctgattggccagaag
tttggggtgagagcccggatcaacgtggatgggatggagctgaaggagagcagcagtgtt
aacgttcccaggaccttcctggtgtctggaaaacaacggtcactagaactacaggccagg
actgaagaagagaagaaggactggatccaggctatccaggccaccattcagagacatgaa
cagacgctagccacgttccaccatctcaactgctctctccgagatgaggactacactcct
cccaactcacctaattgttccgagctggggaagcgtgcccccactccgatccgtgagaag
gaggtgactctgtgtatgaagtgccaggagccgttcaactccatcaccaagagacgtcac
cactgcaaagcctgtggacacgtggtgtgtggaaagtgttcagagttcagggcccgtctg
ctctacgacaacaacagggctaacagggtgtgcatcgactgctacacaaccctagtgggg
gttcccccctcccccgccagcctgacctgcagcataaacagacgacggtcaatactagag
aaacaggcgtcggtggcagcagagaacagtgtgatgtgtagcttcctccaccacatggag
aagggagcaggcagaggctggcagaaagcctggtttgtcatcccagagaatgaaccactg
gtgctgtacatatacggtgctcctcaggatgtgaaagcccagcgctctgtacccctgatt
ggcttcgaggtctcccttactgagtcatgtgaccgcctggaacgccgctttgccttcaaa
atcagccaatcccaccttacgctctacttcagtgccgatggggaggagctacagcgccgc
tggatagaggtcctatcacgcgcagggagaggggaggagctccaggctcatggttcaatt
acagaggccctagaggaggaaggggaggagactgcaacctcgggagagaatacatga
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