Oncorhynchus tshawytscha (Chinook salmon): 112237891
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Entry
112237891 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03030
DNA replication
otw03410
Base excision repair
otw03420
Nucleotide excision repair
otw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112237891
03410 Base excision repair
112237891
03420 Nucleotide excision repair
112237891
03430 Mismatch repair
112237891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
otw03032
]
112237891
03400 DNA repair and recombination proteins [BR:
otw03400
]
112237891
DNA replication proteins [BR:
otw03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
112237891
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
112237891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_7
RuvB_N
AAA_30
AAA_33
AAA_16
AAA_17
AAA_14
BRCT_2
Rad17
nSTAND3
NPHP3_N
AAA_18
NTPase_1
RNA_helicase
AAA_19
Zeta_toxin
AAA_28
SKI
Motif
Other DBs
NCBI-GeneID:
112237891
NCBI-ProteinID:
XP_042169638
LinkDB
All DBs
Position
Unknown
AA seq
1001 aa
AA seq
DB search
MDIRRFFVSSKPAAQKPSRDGTLNTEKEPTKKKKPTTKITSPKVEKKKKKDNDKKRKRRA
VIESDSEEEVVEQKQKAQKPNPPLPPAPLPPAKKDPVQYVSETDSDSDNFLSLKKSQAKP
QGNGVTKPGKARTGTKESHGSPPKPTLAPATGKGGMKKSPPAPVTPKSAPPQTKRTPTSV
LDYFGSGSVQRSDRKLVASTKRKTLSQDPDESLTDEVIAQQLQMDEDMELERQVHEDEEF
AKTLAMLDQQPHAKKARKYSGEDQGSANKSSANSSHSSTTSQPQSNGRDHNQDVIGPSPK
SDCVTSTSPEESEKKRGNSSAFRSFLNRDGPRALGSKPIPTGAENCLEGCVFVISGVLES
MEREDAKSLIERNGGKVTGNISKRTTYLVMGRDGGAAKTEKAEGFGTKILDEDGLLELIR
STPGKKSKYLIAAEAENKGFKSRTPDTKTTSRTPKQSPKLNLKAVIGQQGDQSQANKLLR
WLKNWHTHHAVGGAKTAGRGFGKFTSTKDNGSSFKAALLSGPPGVGKTTTAALVCEELGY
SYVEMNASCTRSKNSLKQVIAESLNNTSINNFYTGSSQTVSSKHVLIMDEIDGMAGNEDR
GGIQEMIGLIKQSRIPIICMCNDRNHQKIRSLANYCFDLRFQRPRLEQIKGAMMSIAFKE
GLKVPPPALNEMILASNQDIRQVLHNLSMWSAKDKVMTYDRVKEDANNARKDMKLGPFDV
CRKVFSXGEESGHMTLIDKSDLFFHDYSLXPLFVQENYIHVKPAAAGGDMKSHLVLLSKT
ADSICDGDLVDRQIRSKQAWSLLPTQAIYSSVLPGELMSGYMNSFPSFPSWLGKFSSGNK
HSRIIQELASHMSLKTLSSRQAVSLDYLPYLRMALLCPLQRQGAEGAGQAVQLLDDYHLV
REDVDSLMEISLWGGQPDPYAKLDPKVKSAFTRAYNRETHLTPYSLQPIKKGRRGGGLEA
EPGGEGQEEQPEEEEEEEEGVAADAMIKVRRKRTSRPPPLF
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgtatcaagcaaacccgcagcacagaaaccatctcgggat
ggaaccctcaacacagagaaggaacccacgaagaagaagaaacctaccaccaagatcacc
agccccaaggtggagaagaagaagaagaaggacaatgataaaaagagaaagaggcgtgct
gtcattgagtcagactctgaggaggaggtagtggagcagaagcagaaggcccagaaacca
aaccctcctcttcctccggctcctcttcctcctgccaagaaagacccggtgcagtacgtc
tctgagacagattcagacagcgataacttcctgtctctgaagaagtcccaggctaagccc
cagggtaatggagtgaccaaaccagggaaggcccgcaccgggaccaaagagagccacggg
tcccccccgaaacccacccttgctcccgccacagggaaaggagggatgaagaagtctcct
ccagcccccgtcacccctaaatcagcgcccccgcagaccaaacgcacccccacctctgtc
ctggactactttggcagtgggagtgtccagcgctcggacaggaaactggtggccagtacc
aagaggaaaactctctctcaggaccctgatgagtcgctgactgatgaggtcatcgcccag
cagctgcagatggacgaggacatggagttggagaggcaggtccacgaggacgaggagttt
gccaagacgctggccatgttagatcaacaaccacacgccaaaaaggctcgtaaatactct
ggtgaggatcaggggtcagccaacaaaagcagcgctaactcctcccacagcagcactacc
agccaaccacagtccaatgggcgggatcacaaccaggacgtgatcggtccgtcccctaaa
agtgactgtgtgacgagcaccagtccagaggaatcagagaagaagcgtggcaactcctca
gccttccgtagtttcctgaaccgagacggacccagagccctgggatctaaacccataccc
actggagcagagaactgcctggagggatgtgtgtttgtgatctctggtgtgttagagagt
atggaacgtgaggatgcgaagtccctgatagagcgcaacggagggaaggtgaccggtaac
atcagtaagaggacgacatacctggtgatgggcagagatggaggagccgccaagactgag
aaggcggaggggtttggaactaagatcctggatgaggatggtctgttggagctcatcaga
agtacaccagggaagaagtccaagtacctgattgctgccgaggcagagaacaagggattt
aagagcagaacaccggacaccaagaccacctcccgcacccccaaacagtccccaaaactc
aatctgaaggctgtgattggtcagcagggagaccagagccaagccaataagttgcttcgc
tggctgaagaactggcacacccaccatgcagtgggaggggctaaaacagcagggagaggg
tttggtaagttcaccagtactaaggataatggttcaagcttcaaggcagccctgttatct
ggacctcctggcgtgggcaagaccaccacagctgccttggtctgtgaggagctgggctac
agctatgtagagatgaatgccagctgtactcgcagtaagaacagtctgaaacaggtgatc
gctgagtctctgaacaacaccagtatcaacaacttctacacaggttcgtctcagacagtc
agtagtaaacatgttctcatcatggatgagattgatggcatggccggcaacgaagaccgc
ggaggaatacaggagatgataggtctgataaaacagtccaggatccccatcatctgtatg
tgtaatgaccgtaatcaccaaaagatccgctctctggccaactactgctttgacctgcgc
ttccagagaccacgactggagcagatcaagggcgccatgatgtccattgcattcaaagag
ggtctgaaagtcccgcctcctgccctcaacgagatgatcctggcatccaatcaggacatc
cgacaggtcctccacaacctgagcatgtggtcggctaaggacaaggtcatgacctacgac
cgggtcaaagaggacgccaacaacgcacgcaaggacatgaagttgggtccgttcgacgtg
tgtcggaaggtgttctccnaaggggaggagtcaggtcacatgacgttgattgacaagtcg
gacttgttcttccacgattactccctgngccccctcttcgtccaggagaactacatacac
gttaaaccagctgctgctggtggtgatatgaagtcccacctggtcctcctcagtaagaca
gctgattctatctgtgatggagacctggtggacagacagatacgttccaaacaggcctgg
tctctactgcccacacaggccatctattccagtgtgttaccaggagagttgatgagtggt
tatatgaactccttcccctcgtttccctcctggctgggaaagttctcctctggcaataaa
cactcccggatcattcaggagctggcctctcacatgagcctcaagacattaagtagcaga
caggcagtgagcctggactacctcccgtacctccgcatggccctgttgtgtcctcttcag
aggcagggggcggagggggccggtcaggccgtccagctgttagacgactaccacctggtc
agagaggatgtggacagcctcatggagatcagcctctggggggggcagcccgacccctac
gctaaactagaccccaaggtgaaatcagcgttcacgagggcctataaccgggagacccac
ctgacaccgtactcactccaaccaatcaagaagggccgtcgtggcggggggttggaggca
gaaccgggaggagaggggcaagaggaacagcctgaggaagaggaggaggaggaagaaggt
gttgcagctgacgccatgatcaaagtaaggaggaaacgcacttctcgaccccccccactt
ttctga
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integrated database retrieval system
