Oncorhynchus tshawytscha (Chinook salmon): 112237935
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Entry
112237935 CDS
T05605
Symbol
dennd4a
Name
(RefSeq) LOW QUALITY PROTEIN: C-myc promoter-binding protein
KO
K20163
DENN domain-containing protein 4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112237935 (dennd4a)
Membrane trafficking [BR:
otw04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
112237935 (dennd4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
dDENN
uDENN
PPR_2
PPR_3
PPR_long
PPR
Motif
Other DBs
NCBI-GeneID:
112237935
NCBI-ProteinID:
XP_042183536
LinkDB
All DBs
Position
LG01:complement(1800076..1904952)
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AA seq
1912 aa
AA seq
DB search
MMEETGPRIADYFVVAGLTDSSKPLEEELQLDDVPGRSPRSAPGGRPLAPITDIAVVICS
LGEAVPQGYTCLESTPSGLSAELNGASLRGPQIYLCYKRGRDKPPLTDLGVLYEWKEKLK
PGCHIVQTTPSGRPANISSSSSQRIYITYRRSPQSQPHTSLAVTDVCIIIPGKGETPPHT
FCKVDKNLNSSMWGSSVYLCYKKSLAKTNTIAYNAGLLCRYPEEDDESFPLPESVPLFCL
PMGASIEFWPAHTKHSLPVFSTFVLTGASGDKVYGAAIQFYESYPEDQLSDKQRSLLGLP
GTCSSSEGTKSVYANKSICLLSHWPFFDSFRNFLTFLYRYSISGPHALPIEKHISHFMHK
VPFPSSQRPRILLQLSPHDSLMLSQPVSSPLPLSGGRLSTLLLNLGPKNATTLLVLAVTE
HKILVHSLRPAVLTSVTEALVSMIFPFHWPCPYIPLCPLALADVLSAPCPFIVGVDSRYF
DLYVPPPDVCCVDLDTNNILHKEEKRALTWKILPQKACKHLLNTLGRLYQQLTEGGQVSG
EDGQMEPTAIDPDLASGGKSLHTLEMQIQEAFLRFMAAILKGYRSYLLPITQAPSERTTD
ASSLFDLQGFLKSRDRSHQKFYSQMIKTQMFIRFIEECSFVSDKDASLAFFDECVDKIYS
NGSKIQMDSDGPEDTRLIELDESHRSEHTVYINPPDLRLLAQGEEHPLCYSYSGFPVLSR
DLLELQDGPRPSSASLTQRHTSPASPAAIFRRSKQEIRSAQRMAKTHASVPQMWSKCLLR
HCYGLWFICLPAYASACHSKVRALRMAYDILRKMQDKKLQAPDEVCYRVLMQLCGQYSQP
VLAVRVLFEMKKAGVHPNAITYGYYNKAVLESTWPSTGSRGGYFLWAKLRNVVLGVGRFK
QTVQNHNQNQTQSRDTQLSDYSDLDTVSHGSEDSTNDSVERVSIDTDFTKMDSSDDGSST
GGQSDQGYDSLSKEEERMVGRDSDRTPLAQDKSERESCTLTRQDHTTSPGDFKTPCGTRP
KNRRLRPNSLDLTGGQGTLRTITLNFTSTTMQVRGPAPKRPPPPNCKPGKAEASQAVPTQ
NQKRLDGGEGEEVEGSKDRQTPAKEVERRSVNVSGGDTERPATHSVSGDGDGVVTHSVSG
DGAVTHSVSGDGVVTHSVSGHSVSGDGIVTHSVSGDGVVTHSVSGDGVVTHSVSGDGNGP
ADCSVSKQNSVRNSSETVGGAVKRTSIVETGFDPLSIIAAETETEGDGDSSSTSTARRDL
AEEIEMYMKVLSPLSSRTASMDLQNPSSPLLHATSTPSKHSSRRPRPLSLTHSPCTSPRP
PPPLLRANSHLPLSRPKERLRPSSLVSPSSPTLSLDMFKSSFLSAGKGVAEKASRLYSRL
SSQTSLSQDVNCDQISVSSMNSVDPECTSLLEEGSVLDPEGFTSSYASPQHDSIACLRRS
PARGRLVSQSPTSPCKVFRHNSFSSGLAPPSRGPQTPDSSPDASRFHLRHHYTTEVLMSS
CCRCKTCDCLVYDEEIMAGWTADDSNLNTTCPFCGSSFLPFLTVHIRDLRHRTSDEGHQP
LGEDTAASVNPETAAGALTPQSTTAPAAEEQDTEGVAGCPQDPVPGTTSDLTSAPSPTSA
PPPISPISNLSPTSSLSPIPPPPASPPSPASTTTRSSPVSSSPTPTPSPSPPAPVTVPYL
SPLVLWKELESLLGNEGDQVISSPSIVDQHPIVFWNLVWCYRRLELPSHLPGLILTSQHC
SQGHVPQVPAQSVSSEDSKHVLVRILWDNPSLHQDSVQALYMLWHAHFSLPSASGTVYEE
GQPQDHLFSSEVLQGAVRNIQKGDVYQPMSQILQLLGPELGFNRQRSLYRDLLFLALTAL
GKSNINIDAFDREYKVAYDRLSPSQVKLTHNCDRXPGAGVMECRRMFGKPIL
NT seq
5739 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggagacaggtcctcgcatagcagactactttgtggtagcagggctcactgac
tcctccaagcccttagaggaggaactgcagctggacgatgttcctggtcgctctccccgc
tcggcccctggtggtcggcccctggcccccatcacagacatagctgtggttatatgctca
ctaggggaagcggttcctcagggttacacctgcctcgagtccaccccgtctggtctgtct
gcagagctgaacggagccagtctcagagggcctcagatctacctctgctacaagagaggc
cgagataaacctcctctcactgatctgggggttctgtatgagtggaaggagaagctgaag
cctggctgtcacatcgtccaaaccactccctctggtcgtcctgccaacatcagtagctcc
tcctcccagcgcatctacatcacctatcgccgctccccgcagagccagcctcacacgtca
ttggctgtcacagatgtctgcatcatcatcccgggcaaaggggagacgccccctcacacc
ttctgcaaggtggacaagaacctcaatagtagtatgtggggatcctcggtgtacctgtgt
tacaagaagtcactggctaaaaccaacacaatcgcatacaacgcaggtctgttgtgtagg
tacccagaggaggacgatgagtcttttcccctgccggagtctgttcctctgttctgtctg
cccatgggagctagcattgagttctggccagctcacaccaaacactccctgcctgtcttc
tctacctttgtactgactggggcctctggagacaaggtgtatggagctgccatccagttc
tatgagtcgtacccagaggaccagctgagtgacaaacagcgttctctgctggggctaccg
ggcacgtgcagtagcagcgaggggacaaagagcgtttacgctaacaagagtatctgtttg
ctgtcacactggccgttctttgactcattcaggaacttcctgacgtttctctacagatac
tccatctctggaccacacgctctgcccatagagaagcacatctcccacttcatgcacaaa
gtcccgttcccctcgtcacagagaccacgcatcctgctacagctgtctccacatgatagt
ctgatgctgagccagcctgtctcctcccctctgcctctcagtggtggtcgtctctccact
ctgctccttaacctgggccctaagaatgcgaccactctgctggtgctggccgtaacagaa
cacaagatcctggtccactctctcagaccggccgtactgaccagtgttacggaggccctg
gtgtcgatgatcttccccttccactggccgtgcccctacatccctctgtgccctctggcc
ctggcagatgttctctctgccccttgccccttcatcgtgggggtcgactcacgttacttt
gacctctacgtgcctccgcccgacgtctgctgtgtcgacctggacaccaacaacatatta
cataaggaggagaagagggccctaacatggaagatactaccacagaaagcctgcaaacat
ctcctcaataccctgggtagactgtaccaacagctgactgaaggtggccaagtcagcggc
gaggatggtcagatggagcccactgcgattgacccagacctggcgagcggagggaagagc
ctccacacgctagagatgcagatccaggaagccttccttaggttcatggcggccatattg
aaagggtaccgctcttacctcctccccatcacacaggccccctccgaaaggaccacggac
gcaagctcactgttcgacttgcaagggttcttgaagagccgggatcgttcccaccagaag
ttctactcccagatgatcaaaacccaaatgtttatccggttcatcgaggaatgttccttc
gtcagcgataaagacgccagtctggccttcttcgacgagtgtgtggataagatttacagc
aatggaagcaagattcagatggacagtgatggaccagaagacaccaggttgatagagctg
gacgagtcccatcgcagtgaacacacagtctacatcaaccctcctgatctaagactgttg
gctcagggagaggagcacccactctgctatagctactctgggtttccggtgctgagtcgt
gatttgttggagctccaggatggacctcgcccctcctcagccagcctgacacagagacac
accagtccagccagccctgctgccatctttaggcgctccaaacaggagattcgctcggcc
cagcggatggctaaaacccacgcctccgtacctcagatgtggtctaagtgtctgctgcgt
cactgttacggcctgtggttcatatgcctgccagcctacgccagcgcatgccactccaag
gtgcgggcactacgcatggcctacgacatcctgaggaagatgcaggacaagaagctacag
gcacctgatgaggtgtgttaccgagtgttaatgcagctatgtggacagtacagccaacca
gtcctggcggtcagagttctgtttgagatgaagaaggctggagttcatcccaacgccatc
acctacggttactacaacaaggcagtgttggagagcacgtggccgtccacaggaagtaga
ggaggctacttcctgtgggccaagctgaggaacgtagtcctgggggtaggacggttcaaa
cagacggtccagaaccacaaccagaaccaaacccagagtagagacacacagctatcagac
tacagtgatctggacacagtcagtcatggcagtgaagacagtactaacgactcagttgag
cgggtctcaatcgatacagacttcactaagatggactccagtgatgacggatcaagcaca
ggtggccaatcagaccaaggctatgactctctatctaaggaggaggagaggatggtggga
agggacagcgacagaacaccactagcgcaggataagtcagagagggagtcttgtactctg
actagacaggaccacaccaccagccctggtgacttcaaaactccctgtggtaccagacca
aagaaccggaggctgaggcccaactccctggacctgaccggaggacaggggactctcagg
accatcacactcaacttcacctccaccaccatgcaggtccgaggccctgctccgaaacgc
cccccgcctccgaactgcaaacctgggaaagctgaggccagtcaggcggtgcctacccag
aaccagaagagattggatgggggagagggggaggaagtagaaggcagtaaggacagacag
acacctgccaaagaggtggaaaggaggagtgtgaacgtcagtggtggagacactgaaagg
cctgcaacccacagtgttagtggagatggagacggggttgtaacccacagtgttagtgga
gatggggctgtaacccacagtgttagtggagatggggttgtaacccacagtgttagtgga
cacagtgttagtggagatgggattgtaacccacagtgttagtggagatggggttgtaacc
cacagtgttagtggagatggggttgtaacccacagtgttagtggagatgggaacgggcct
gcagattgcagtgtctccaaacagaacagtgtaagaaacagcagtgaaacggtgggcgga
gccgtgaagaggacaagtatcgttgagactggctttgaccctctgtccattatagcagct
gagacggagacagagggtgatggggacagtagcagtacctccacagcccgccgggacctg
gcagaagagatagagatgtacatgaaggttctgagccctctgagcagcaggaccgccagc
atggaccttcagaacccatccagcccgctactccacgccacctccaccccatctaaacac
tcctcccgccgacctcggcccctcagcctgacccactccccctgtacctccccccgacca
cctcctcccttgcttcgtgccaactcacacctccccctctccaggcccaaagaacgtctc
cgtccctcctccctggtctccccctcctccccaactctcagtctggacatgtttaagagc
agcttcctgtcagcagggaagggggtggctgagaaggccagcaggctctactcccgcctg
tcatcacagacatcactctcacaggatgtgaactgcgaccagatcagcgtgtcatcaatg
aactcagtggacccagaatgcacctctctgttggaggagggctctgtcctggaccctgaa
ggtttcacctcctcctacgcctcgccccagcacgacagcatcgcgtgcctgaggaggagc
ccagccaggggacgcctcgtctctcagagccccacctcgccctgcaaggtgttccgccac
aactccttctctagtggtttggctcctccatctagaggtccccagactccagactcttct
cctgatgcctcccgcttccacctccgtcaccactacactactgaggtgttgatgtctagc
tgctgtcgctgtaagacatgtgactgtctggtgtatgatgaagagatcatggcaggatgg
acggctgatgactccaacctcaacaccacctgtcccttctgtggctcttccttcctgccc
ttccttactgtacacatcagggacctgagacacaggaccagtgacgagggtcaccaacct
ttaggagaggacacggctgcttcagtcaaccctgagactgcagctggagcactgacaccc
cagtcaaccacagctccagcagcggaggaacaggacactgagggtgtagctgggtgtcca
caggaccctgtcccaggcacaacttcagatctaacctcagccccatctccaacctcagcc
ccacctccaatcagccccatctccaacctctcccccacctccagcctctcccccatcccc
ccacctccagcctctcccccatcccctgcctcaactacaactcgtagttccccagtgagt
agttctccaaccccaaccccatccccatctcccccagccccggtgacggttccctacctg
agtcccttggttctgtggaaagagctagagtctctgctgggtaatgagggggaccaggtg
atcagttctcccagcatcgtggaccagcaccctatcgtattctggaacctggtgtggtgc
taccgcagactggaactcccctctcatctgcccggtctcatactgacctcacagcactgc
agccagggacacgtaccgcaggtcccagcccagagcgtgtcttcagaggacagtaaacat
gtcctggttcgcatcctgtgggacaacccgtcactccaccaggactctgtccaggcccta
tacatgctctggcacgcacacttctctctcccctcagccagtggaacggtgtatgaggag
ggccagccccaggaccatctcttctcctctgaggtcctacagggtgcagtgaggaacatc
cagaagggggatgtctaccaacccatgagtcagatcctacagctgctgggaccagagctg
ggcttcaacagacagaggagtctgtacagagatctcctcttcctggcgttgaccgctctg
gggaagagcaacatcaatattgatgcgtttgaccgtgagtacaaggttgcttacgaccgc
ctcagccccagccaagtgaagctgacacacaactgtgaccggnccccgggagcaggggtc
atggaatgtagaaggatgttcgggaaacccattctgtga
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integrated database retrieval system
