Oncorhynchus tshawytscha (Chinook salmon): 112238097
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Entry
112238097 CDS
T05605
Name
(RefSeq) contactin-1a-like
KO
K06759
contactin 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112238097
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112238097
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
otw00537
]
112238097
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
Contactins
112238097
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
otw00537
]
Others
112238097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_5
C2-set_2
V-set_CD47
Sp38
Pur_ac_phosph_N
C2-set_3
Motif
Other DBs
NCBI-GeneID:
112238097
NCBI-ProteinID:
XP_042157708
LinkDB
All DBs
Position
LG19:complement(49371899..49525627)
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AA seq
1008 aa
AA seq
DB search
MLHFTVLLLCLLSLTLTSTDDATGYGPVFEDQPVDTIYPEESPEAKITLSCRARANPPAT
YTWRLNSRNIDQDEDNHYTLVGGNLVISNPIKNKHVGKYTCKATNDYGTVVSREAAVQFG
YLDFFSSEEREAVYVKEGQGAVLLCAPPPHYPDELSFRWILNEFPVFIPLDKRRFISQTT
GNLFISKVDSSDSGNYSCFVSSASIAKSVFSKFIPLVPLAERPIRKYPADIKVKFPDTFA
LVGQNITLECFALGNPIPQIRWRKMDGELPANHEVSMAGAHLQLYHVQYEDEGTYECEAL
NSKGKDWHRARVSVEAFPEWTESISSTERDISSDYTMSCEASGKPKPHVHWLKNGYPYDK
HDLKFRGLTFEDSGMYQCRAENRHGVVYADAELRVIACSPTFEHNPVKRRILGAKNGRVV
LECRPKAAPKASLSWSKGSELLFNSSRMLIWEDGSLEILNVTRADEGRYTCFAENDRGKA
NSTGFLSITEATKITLAPSNADVTAGESASMQCAASHDSTLDITFVWTMDGRSIDFDRDG
SHYERNPNGGSSGELIIKNTQLNHSGRYTCTAQTPVDNVSASADLVVRGPPGPPGGVRVE
EIRNKSVRLIWSSGADNHSPISKYTVQCRDWFSQEDWRDATTSPPDVEGNAETATVVDLF
PWTEYEFRVIATNTLGTGDPSSPSPKVTTLEAVPVVAPSDIGGGGGTSKELTITWTPVQP
QYYYGRNFGYIIAFKPHDVYEWMKVTVADPEAKHYVHKDSSIPASTEFQVKVKAFNIKGE
GPYSLTAVIYSAQDVPSEAPASVEARALSATEAIVWWLPVIQHTVEGYQVRYWMKVEDRE
ASSQRVVVSSRENQTRLENMRPNSPYLIEVRAYNAAGYGPPSHHFQIYTKKAPPSRPPKI
ISKKLKGTSVNIAWEHVEPLANESTIDGYKVLYRKAGLSTGLLYTTRKRSIDLPMPRDGD
CVVEVRAHSEGGDGAVAQVRISGGAVMVTQSLSLASLLLVAMLCLLAL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgctgcacttcactgtgctcctcctctgcctcctgtccctgactctcacttccactgac
gatgctacaggttacgggccggtgtttgaggatcagccggtcgacaccatctaccccgag
gagtcacctgaggccaaaatcaccctgagctgtcgagcacgagccaacccacctgccaca
tacacgtggagattaaacagcaggaatatagaccaggatgaagacaaccactacactttg
gtgggaggcaacctggtcatctctaaccccatcaagaacaaacacgttgggaagtacacc
tgtaaggccaccaacgactacggcactgtggtcagcagagaagccgctgtccagtttgga
tacctggacttcttctcctctgaggagagagaggcagtgtatgtgaaggagggccagggg
gcagtgctgctctgcgctcctcccccacactacccagacgagctgtcattccgctggatt
ctgaatgagttccccgtcttcatccctctggataaacgtcgcttcatctctcagactaca
gggaacctcttcatctctaaggtggactcgtctgacagcggaaactactcctgcttcgtc
tctagtgcctccatcgccaagagcgtcttcagcaagttcatcccactcgtccccctggct
gaacgcccaataaggaagtaccctgctgatatcaaagtcaagttcccagacacctttgca
ctggtgggccagaacatcacactggaatgcttcgccctgggaaaccccatccctcagatc
cgctggaggaagatggacggagagctgccggccaatcatgaagtcagcatggcaggggcc
cacctccaactgtaccacgtgcagtatgaggacgaggggacgtacgagtgtgaggccctc
aactccaaagggaaggattggcaccgggctcgggtctctgtagaagccttcccagagtgg
acagagtccatcagcagtacagagcgggacatcagcagtgactacaccatgtcctgtgag
gccagcggcaagcccaagccccacgtccactggctcaagaacggctacccgtacgataag
catgatctgaagttcagaggactgacgtttgaggactctgggatgtaccagtgtagagcg
gagaatcggcatggagtcgtctatgctgacgcagagctgcgtgtgattgcgtgctcccct
acgtttgagcataacccagtaaagaggaggatcctgggggctaagaacggccgtgtggtc
ctagagtgtagacctaaagctgctcccaaagcctcactgtcctggagcaagggctctgaa
ctcctcttcaactccagcaggatgttaatctgggaggatggtagtctggagatcctgaat
gtgaccagggcagacgaggggcgctatacctgctttgctgagaacgaccggggcaaggcc
aacagcacaggtttcctctctatcacagaggccactaagatcaccttggctccgtccaac
gcggacgtgacggctggcgagagcgccagcatgcagtgtgccgcatcacatgactcaacg
ctggacatcacgttcgtctggaccatggacggccgctccatcgacttcgaccgggacggg
tcccactacgaacgcaacccgaatggtgggtccagtggagagctgatcatcaagaacacc
cagctgaatcactctggacgttacacctgcaccgcccagacccccgtagacaacgtctcc
gcatccgctgacctggtcgtcagaggtccccctgggcctccaggtggggtacgtgtggag
gagatcaggaacaagagtgtccgtctgatctggagcagtggagcagacaaccacagcccc
atctctaaatacaccgtccaatgccgggactggttctctcaggaagactggagagatgcc
accacatcccctccggatgtggaaggcaatgcagagacagccacagtggtggacctgttt
ccctggacagagtatgagtttagggtgatagccaccaacaccctggggacaggagacccc
agcagcccctctcccaaagtcaccacgttggaggctgttcccgtggtggcgccctcagac
attggcggtggtggcgggaccagcaaggagctgaccatcacttggacgccggtgcagccg
cagtactactacggccgcaactttggctacatcatcgccttcaagccccacgatgtctat
gaatggatgaaggtgactgtggcagaccccgaggctaaacactatgtccacaaagactca
tccatccccgcctccacagagttccaggtcaaagtcaaggctttcaacattaaaggagaa
ggaccctatagtctcacggctgttatctactctgcacaagacgtgccatccgaagcccct
gccagtgtggaggccagggcgttgtctgccactgaggccattgtgtggtggctccctgtc
atccagcacaccgttgaaggataccaggtgcggtactggatgaaagtggaggacagagag
gcatccagtcagagagtggtggtgtccagcagagagaaccagacaaggttggagaacatg
aggccaaactccccctacctcatagaggtcagggcctacaatgcagccggatacggaccc
cccagccatcacttccagatctacaccaaaaaagcccccccaagccggcctcctaaaata
atcagtaaaaagctaaaaggaacgtcagtaaacatcgcctgggaacatgtcgaacccttg
gccaacgaatcaacaatagatggatacaaggtcttgtacaggaaggctggcctctccaca
ggtctactgtataccacaaggaagcgatccatagacctgcccatgcccagggacggggac
tgcgtagtggaggtcagggcccatagcgagggaggagatggggctgtggcccaagtacgc
atctcaggtggagccgtcatggtcacccagtccctcagcctggcctctctgctcctggtg
gccatgttgtgcctgctggccctctga
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integrated database retrieval system
