KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112238182
Entry
112238182         CDS       T05605                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112238182
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:otw03041]
    112238182
   03036 Chromosome and associated proteins [BR:otw03036]
    112238182
Spliceosome [BR:otw03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    112238182
 Complex B
    112238182
 Complex C
   U2 SnRNP specific factors
    112238182
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    112238182
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 DUF5870
Other DBs
NCBI-GeneID: 112238182
NCBI-ProteinID: XP_024262528
LinkDB
Position
LG03:50402932..50418520
AA seq 1326 aa
MAKVAKTHEDIEAQILEIQGMKAALVEEGADQGVGLDSTGYYDQEIYGGSDSRFAGYVTS
IAANEQEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIAEREDE
YKARRRQMIISPERLDPFADGGKTPDPKLQSRSYMDVMKEQHLTKEEKEIRQQMAEKAKT
GDLKAVNGSAASQAAAAAAKRKRRWDQTAEKQDQSGTPSNTGTPKKMSSWDQADQAAEQT
PGHTPGHTPSNSRWDETPGRNKGSETPGATPSSRMWDPTPSHTPAGAATPGRGDTPGHTT
PGHGGATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVGETPTPGASKRKSRW
DETPASQMGSSTPLMTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDERNRP
LTDDELDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQQEDRSMKQIND
QPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQ
ITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVI
EPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASA
LGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQ
QKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMD
AEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHF
WQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGN
LGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLW
RLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALK
AIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRI
CFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAI
VAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALM
DRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLR
VAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPHVYNDEKNPYLRY
ELEYFL
NT seq 3981 nt   +upstreamnt  +downstreamnt
atggcgaaagtcgccaaaacacacgaagacattgaggcccagatcctggagatccagggt
atgaaggctgccctggtggaggagggagcagatcagggtgtgggcctggactcaactgga
tattacgaccaggagatctatggtggcagtgacagccgcttcgctggatatgtcacctcc
attgctgccaatgaacaggaggatgatgacgaggaggactcttcaacaagtctacttgga
cagaagaaaccggggtatcatgctccggtggctatactcaatgcgataccacagtcagat
gaacagtacgacccgttcgccgagcacaggcccgccaagattgcagagcgtgaggacgag
tacaaggccagacgacgacagatgatcatctctccggagcgactcgacccctttgcagac
gggggcaaaacgccggacccaaagctgcagtccaggtcgtacatggatgtcatgaaggag
cagcacctgaccaaagaggagaaagagatccgtcagcagatggcagaaaaggccaagacg
ggagacctgaaggctgtcaacggctctgctgcctcccaggctgccgctgccgccgccaag
cgcaaacgccgctgggaccagacggccgagaaacaggaccaatcaggaacccccagcaac
accggcacacccaagaagatgtctagctgggaccaggctgaccaggctgctgagcagacc
ccaggacacacccctggccacaccccctccaacagccgctgggacgagacccctggcagg
aataagggcagcgagaccccaggggccactcccagctcccggatgtgggacccaaccccc
agccacaccccggccggagcagccaccccaggcaggggggacacaccgggacacaccacc
cccggacatgggggagccacaggcagcgtgcgcaaaaaccgttgggatgagacccccaag
actgagagggagacccctggtcatggtagtggttgggccgagactccccgtacagacaga
ggagacgagtctgtgggagagacccccacccccggggccagtaagaggaagtcccgttgg
gatgagacccctgccagccagatgggctcttccactccactgatgacccctgggaagacc
cccattggaacccctgccatgaatatggccactccctctccaggtcacctgatgagcatg
accccagagcagctgcaggcgtggcgttgggagagggagatcgatgagagaaaccgacct
ctcacagacgatgagctggacgccatgttcccagagggatacaaggtccttcccccacca
gcaggctatgtgcccatccgtaccccggcccggaagctgtctgccacacccacccccatg
gggggcatgacgggcttccacatgcagcaggaggaccgctccatgaagcagatcaacgac
cagcccagtgggaacctgcccttcctcaaaccagacgacatccagtactttgataaactg
ctggttgaggtagatgagtccactctgagcccagaggaacagaaggagcgtaagatcatg
aaactgctgctgaagatcaagaacggaacacctcccatgagaaaggctgccctgcgtcag
atcacagacaaggcgagggagtttggagcagggcccctattcaaccagatcctgcccctg
ctcatgtctcctactctggaggaccaggagcgccacctactggtcaaggtcatcgaccgc
atcctctacaagctggacgatctcgtccgcccatacgtacacaagatcctggtggtgatt
gagcccctgctgattgatgaagattactacgccagagtggagggcagagagatcatctct
aacttggccaaggctgccggcctggccactatgatctccaccatgaggcctgatattgac
aacatggatgagtatgtcagaaatacaacagccagagctttcgctgtcgtagcgtccgct
ctgggtatcccatccctgctgcccttcctcaaggctgtgtgtaagagcaagaagtcatgg
caggcccgccacacgggcatcaagattgtccagcagatcgccatcctcatgggttgtgcc
atcctgccccatctgaggagtttggtggagatcatcgagcatggtctggtggatgagcag
cagaaggtgcggaccatcagtgccctggccattgctgccctggcggaggctgccactccc
tacggtatcgagtcctttgactccgtactcaaacccctgtggaaaggtatcagacagcac
agaggaaagggtctggctgcgttcctgaaggccattggctacctgatccctctaatggat
gctgagtatgctaactactacaccagagaggtcatgctgatcctcatcagagagttccag
tcccctgacgaggagatgaagaagatcgtgctcaaggtggtgaaacagtgctgtggtact
gacggtgtggaggccaactacatcaagacagagatcctgccccccttcttcaagcacttc
tggcagcacaggatggccctggacagacgcaactacagacagctggtggacaccacagta
gagctggccaacaaggtgggagcagccgagatcatctctcgtatagtagatgacctgaag
gacgaggcagagcagtacaggaagatggtgatggagaccatagagaagatcatggggaac
ctgggagctgctgacatcgaccacaagctggaggagcagctgatcgacggcatcctgtac
gccttccaggaacagaccactgaggactctgtaatgctgaacgggtttggtacggtggtg
aatgccctggggaagagggtgaagccctacctgcctcagatctgtggtacggtactgtgg
cgtctcaacaacaagtctgccaaggtccgccagcaggctgctgacctcatctctcgtacc
gccgtggtcatgaagacctgccaggaggagaagctgatgggtcacctgggagtggtgtta
tatgagtacctaggagaggagtatcctgaagtactgggaagcatcctcggtgctctcaag
gccatcgtcaacgtcatcggcatgcataagatgactccaccaatcaaagacctgctgccg
cgcctgacgccaatcttgaagaacagacatgagaaggtgcaggagaactgtattgacctg
gtgggcaggattgctgacaggggtgctgagtacgtgtcggccagggaatggatgcggatc
tgttttgagctgctggagctcctgaaggcccacaagaaggccatccgcagagccactgtc
aacacctttggatacatcgccaaggctatcggaccccatgacgtgctggccacactacta
aacaacctgaaggttcaggagcgtcagaacagagtgtgtactaccgtagccatcgccatc
gtggctgagacctgttctcccttcaccgtgctccccgcgctcatgaatgagtaccgcgtg
ccagagctcaacgtgcagaatggcgtgctcaagtccctctccttcctgtttgagtacatt
ggggagatgggcaaggactacatttacgctgtcacgcccctgctggaggatgcactgatg
gacagagacttggtccacagacagacagccagtgccgtggtgcagcacatgtccctgggc
gtctacggcttcggctgtgaagactctctcaaccacctgctcaactatgtgtggcccaac
gtgtttgagacgtcgccccacgtcatccaggctgtgatgggggccttggaaggcctcagg
gtggccatcggcccctgccgcatgctgcagtattgcctacagggtctgttccacccagcc
aggaaggtgcgagacgtctactggaagatctacaactctatctacatcggctcccaggat
gctctcattgctcattacccacacgtctacaacgatgagaagaacccttacctccgctat
gagctggagtacttcttgtga

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