Oncorhynchus tshawytscha (Chinook salmon): 112238214
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Entry
112238214 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase RLIM
KO
K16271
E3 ubiquitin-protein ligase RLIM [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112238214
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112238214
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112238214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-C3HC4_3
Gp5_trimer_C
zf-RING_UBOX
Prok-RING_4
zf-RING_16
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
112238214
NCBI-ProteinID:
XP_042182113
LinkDB
All DBs
Position
LG08:89946415..89952759
Genome browser
AA seq
780 aa
AA seq
DB search
MEGSDSSEPGASDQPEAQRRRQRDRLDREEAFYQFVNNLSEADYRLMRDNNLLGTPGEIT
AEELLSRLQQIKDGPEQQQPSINTSETGEATGELAEGPEDPSNGDTLLDWLNTVRRTGNT
TRSGHRGNQSWRAVSRTNPNSGDFRFSLEINVNRNLAEQQARAEGEAEAQEEAPTRAPGN
GVEVQPEAGTEVPMETGEVLEEPVVEEMAVIVEPEAEMEPEAEVEAEPEAEVEAEPEAEV
EAEPEAEVEAEPEAEVEAEPEAEVEAEPEAEVEAEPEAEVEAEPEAEVEAEPEAEVEAEP
EAEVEAEPEAEVEAEMVPELVVEVVPQPPSSVTTTPPVSRPASPLVQAPPAAPAPPSPPP
EEPPRRGQRRARSRSPEQRRTRARTTRSRSPLTLDRLPRHVPTSATSHSPATQAPAEGSS
RTRQHVLSRQSTAEYEAQSAGTGFDTGSGNAPEPGTTPPQEGEAAGGEGAAGRRPPTIML
DLQVRRVRPGEYRQRDSIANRTRSRSQNSNNTFLYESERGGFRRTFSRSERAGVRTYVST
IRIPIRRISDAGLGEATSMALQTMIRQIMTGFGELSYFMDSDSDSSDSNRGGGNPTGAAD
LAEALNTPDGGVAGMAEGAEPPVSVSGHSIGGVGEARTEEREGEDGMGLGLSPVIGLGVG
GTPREGRARPRAPISLEEPGSLPFLRLAHFFLLNDEDEEQPRGLTKEQIDNLSTRNFGES
DALKTCSVCITEYAEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVSANRESVV
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggagggctccgacagttccgagccgggcgccagtgaccaaccagaggcccagcgcagg
cggcaacgggaccggctagaccgggaggaggccttctaccagtttgtcaacaacctgagt
gaggcagactaccggctgatgagagacaacaacctgctgggtaccccaggtgagatcaca
gcagaggagttgttgagtcggctgcagcagattaaggatggaccagagcagcagcagcct
agcatcaacaccagtgagactggagaagctacaggtgaactggcagaaggtccagaggac
ccgtctaacggcgacaccctcttggattggctgaacaccgtcaggcggacaggcaacacc
acccgcagtggtcaccgaggcaaccagtcatggcgggcggtgagccggaccaacccaaac
agcggagacttccggttcagtctggagatcaacgttaaccgtaacctggctgagcagcag
gcccgcgcagagggggaggccgaggcgcaggaggaggccccaactagagcacctggcaat
ggggtggaggtccagcctgaggcggggacggaggtgcccatggagacaggagaggtgctg
gaggaaccagttgtggaggagatggctgtcatagtggaaccagaagcggagatggagcca
gaggctgaagtagaagctgagccagaggctgaagtagaagctgagccagaggctgaagta
gaagctgagccagaggctgaagtagaagctgagccagaggctgaagtagaagctgagcca
gaggctgaagtagaagctgagccagaggctgaagtagaagctgagccagaggctgaagta
gaagctgagccagaggctgaagtagaagctgagccagaggctgaagtagaagctgagcca
gaggctgaagtagaagctgagccagaggctgaagtagaagcagagatggtcccagagtta
gtagtagaggtagtcccacagccgcccagctctgtcaccaccacccctcctgtctccaga
cctgccagtcccctggtgcaggcccctccagccgcccctgcccctcctagcccgcccccc
gaggagcctccgcgacggggccagagacgagcccgcagccgtagccctgagcagcgccgg
accagggctcgcaccacacgaagtcgttcccccctcaccctggaccgactcccccgccac
gtccccacctcagccacctcacacagccccgccacccaggcacccgcagagggaagctca
cggactcgacagcatgttctgtcccggcagagcaccgcagagtacgaggcccagtcagcc
ggaacagggtttgacacaggttctgggaacgccccagagcccggtaccaccccaccccag
gagggagaggccgcgggcggggagggagcagcaggacgacgtccccccaccatcatgctg
gacctgcaggtgcgtcgtgttcgtccaggtgagtaccgccagagggacagcattgctaac
agaacccgctcacgctcccagaactccaacaacaccttcctgtacgagagtgagaggggt
gggttccgcaggaccttctcccggtccgagcgtgcgggtgtgaggacgtacgtcagcacc
atcaggatccccatcaggaggatcagtgatgcagggttgggagaggccacctccatggct
ctgcagaccatgatacgacagatcatgaccggcttcggagagctcagctacttcatggac
tcagactctgactcctcggactcaaaccgtggcggtggtaaccccactggcgctgccgac
ctggccgaggcgctcaatactcccgacgggggagtagccggcatggcggagggggcggag
cctcctgtctcagtgagcgggcatagtattggaggagtcggggaggcaaggacagaggag
agggagggggaggacgggatgggtctaggtctgtcccccgtgataggtttaggggtaggg
ggcacccccagggaggggcgagctcggccccgtgcccccatcagtctggaggaaccaggg
tcactacccttcctccgccttgctcacttcttcctcctgaatgatgaggatgaggaacag
cccagaggactcaccaaggagcagatcgacaacctctccaccaggaactttggggagagt
gatgctctgaagacctgcagtgtgtgtatcacagagtatgctgaggggaacaagttgagg
aagttgccctgttctcatgagtaccatgttcactgtatcgaccgctggttgtctgagaac
tccacctgtcctatctgccgcagggccgtgttggtgtctgctaaccgggagagtgtggtc
taa
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