Oncorhynchus tshawytscha (Chinook salmon): 112238233
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Entry
112238233 CDS
T05605
Symbol
lrrc4bb
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecule (CAM) interaction
otw04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
112238233 (lrrc4bb)
04517 IgSF CAM signaling
112238233 (lrrc4bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112238233 (lrrc4bb)
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
NGL family
112238233 (lrrc4bb)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_14
LRR_9
ig
V-set
Ig_2
LRRNT
DUF7617
Ig_6
Motif
Other DBs
NCBI-GeneID:
112238233
NCBI-ProteinID:
XP_024262566
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Position
LG24:complement(11418819..11430928)
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AA seq
752 aa
AA seq
DB search
MRVVMVTSPSTPSPLLWLVQILLWLHHHGPQVTEAAPPCPNPCSCSNQASRVICTRKSLV
EVPDSISVNTRYLNLQENTIEVIKSDTFKHLRHLEILQLSKNHIRQIEVGAFNGLPNLNT
LELFDNRLTLVPSQAFEYLSKLRELWLRNNPIETLPAYAFHRVPSLRRLDLGELRKLDYI
SEAAFEGLFNLRFLNLGMCGLKEIPNLTPLVRLEELELSGNQLGNVRPGSFQGLVSLRKL
WLMHSKVTVIERNAFDDLKNLEELNLSHNTLHSLPHDLFTPLHQLERVHLNHNPWVCNCD
VLWLSWWLKETVPSNTTCCARCHAPPGLKGRYIGELDQSHFTCYAPVIVEPPTDLNVTEG
MAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQYTCMV
TNSAGNTTATAVLNVSTSDSSNPFSYFTTVTVETVETNNGEDSAARQYINETYVPPDYLG
PTVSGGVLGKGRAGFTISPSRSSLSSLSPRATRATEKAVTVSIMEVTNIPGLDDVMKTTK
IIIGCFVAITFMAAVMLVVFYKLRKQHQLHKHHGPTRAIEIINVEDEMGAGAGSGISGGS
TMQSGCGGDGTLRMHHPEIVNLPNIGRSEHLNHYYKANHFNNNVMGLSIGTGAGISTLSN
KNNPSPLNQQGQDIPISCTQVPISSATFQTMSGNGANTNPLSVSPPLPMSLPMSPMGLHG
SIKGFMGQNQNPQMEPLLFKGNSKENVQETQI
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgttgtcatggtgaccagcccctccaccccttcccccctcctctggttggtccag
attttactgtggctccaccaccatggacctcaggtaacagaggccgctcccccatgtcca
aacccctgtagctgctccaatcaggcaagccgagtcatctgtacaaggaagagtttggta
gaagtcccggacagtatttctgtgaacacaagataccttaacctacaagagaacacgatt
gaggtgataaagtctgacacattcaagcacctgcggcatttggaaatcctgcagctttcc
aagaaccacatcagacaaatcgaggtgggcgcgttcaatggcttacccaacctcaacacc
ctggagctcttcgacaaccgccttacgttggtaccgtcgcaggcctttgagtacctcagc
aagctgcgggagctctggctacggaacaaccccatcgagacactgccggcgtacgctttc
caccgcgttccctccctgcgccgtctcgacctgggcgaactacggaagttggactacatc
tctgaggctgccttcgagggcctgttcaacttgcgtttcctgaacctgggcatgtgcggt
ctgaaggaaatacccaacctcacacccttggtccgactggaggagctagagctgtctggc
aaccagctggggaatgtccggcccggctcgttccaaggcctggtgtcgctgcgcaaactg
tggctcatgcactccaaggtgacggtcattgagcgcaatgccttcgacgacctgaagaac
ctggaggaactcaacctgtcccacaacaccttgcactcgctgccccacgatctcttcacc
ccgctgcaccagttggagcgggtgcacctcaaccacaacccctgggtgtgcaactgcgat
gtcctgtggcttagctggtggctgaaggagacggtgcccagtaacaccacatgctgtgcc
cgctgccacgcgcccccaggcctgaagggccggtacattggtgagctggaccagagccac
ttcacatgctacgctcctgtcattgtagagccacccactgacctcaatgtcacagagggc
atggctgctgagctgaagtgtcgcactggcacctccatgacgtctgtcaactggctcacc
ccaaatggcaccctcatgacgcatgggtcgtaccgcgtcaggatctcagtccttcacgat
ggaaccctgaatttcaccaatgtgactgtgcaggacacgggccaatacacctgcatggtg
accaactccgccggcaacactacggcaaccgcagtgctcaacgtgtctacctcagactcc
agcaaccctttcagctacttcaccaccgtcactgtggaaaccgtggaaactaacaatggg
gaggattctgctgcaaggcagtacatcaacgaaacctacgttccgccagattacctgggt
cccactgtttcaggaggggtacttggtaaaggcagggctggattcaccatatctccatct
cgctcatctctctcctctctgtccccgcgagccaccagagccactgaaaaggcagtcaca
gtgtcgataatggaggtcacgaacatccctggcctggacgacgtgatgaagaccaccaag
atcatcattggctgcttcgtggccatcaccttcatggcggccgtgatgctggtggtcttc
tacaagctgaggaagcagcaccagctgcacaagcaccatggccccacccgcgccatcgag
atcatcaacgtggaggatgagatgggtgccggggccgggagcggcatctcagggggatcg
accatgcaatccgggtgcggaggagacggaaccttgaggatgcatcacccggaaatagtc
aaccttcccaacatcgggcgatcagagcatcttaaccattactacaaggccaatcatttc
aacaacaacgtgatgggtctgagcattgggacaggggcaggcatcagtactctaagcaac
aagaacaacccgtccccactgaaccagcaaggccaggatatccccatctcctgtacacag
gttccaatctcctcagccactttccagaccatgtccggaaatggcgccaacaccaaccct
ctttccgtttccccacctctgccgatgtccctccccatgtcccccatgggattacacgga
tcgatcaagggtttcatgggccagaaccagaatccacaaatggagcctcttttgttcaag
ggaaactcaaaggaaaacgttcaagagactcaaatctga
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