Oncorhynchus tshawytscha (Chinook salmon): 112238239
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Entry
112238239 CDS
T05605
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 4-like
KO
K16355
leucine-rich repeat and fibronectin type-III domain-containing protein 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112238239
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112238239
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
SALM family
112238239
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
112238239
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
Ig_3
LRR_1
ig
fn3
LRR_5
LRR_9
Ig_2
LRRCT
Motif
Other DBs
NCBI-GeneID:
112238239
NCBI-ProteinID:
XP_042153770
LinkDB
All DBs
Position
LG15:40511504..40573180
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AA seq
813 aa
AA seq
DB search
MPDPPPSHSIRRRHPSPHTHTHPQRREEHSILSSLHPSITPSNTLLNSCKLLPLSQSLPG
SFSSHLIRCACPTPGTSTAFPALHWLTLVTCCCLLPSLIGAGETWDVVAVCPFHCVCRNL
SDSLSTLCADKGLLFVPPNVDRRTVELRLGDNYITEVGGADFANMTGLVDLTLSRNTIHS
IRPMTFSDLESLRSLHLDGNRLTTLGPRDLLGLVNLQHLIVNGNQLTRVSAEAFNDLLLT
LEDLDLSYNNLRWVPWESIQNMASLHTLNLDHNLIDRIAEGCFGGLYKLARLDMTSNRLR
TLPPDPLFARSQTGAISPTPYNSVISLNFGGNPLHCNCELLWLRRLVREDDMETCATPPH
LAGRYFWSILEEEFTCEPPLITRHTHKLWVLEGQRATLKCRAIGDPEPIIHFVSPDDRIV
ANSSRTTSSRNGTLDLFFTVARDDGVYTCIAINAAGEATATVDLNIILLPNRNGNVNVPG
NVTVTGNAGNSNGKIQGSSDIATGKSVNSEVDNGGNTRDTEERRGEEGEGDEEGGVVEEE
DGGIRIEEEEEEEEERMVGIQGVTSTSAQVRWDLGQSAGAYLVWMFQIQYNCTADETLVY
RILPSTSNSFMLKNLVSGTDYNLCVLAIFDDIVTSLAATKVLGCAQFSTKELYPECRSLQ
THFLGGTLTILVGGVVVVTLLVFTVALMVRHRVCSNQDDHCHHGVDSDELACCQGGSLGS
PVKEASAGGGGGGGVYGQSNGNRDVMMVVLPNGLPTKQRGGRTKERAKEKKKDKEKGNEG
EKEREKGGADVPPKIPPKPKPQTLPRSSREGEK
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgccagaccccccaccttcccattcaatccgaagacgacacccatcaccccacacacac
acacacccacagagaagggaagaacattccatcctctcttccctccatccctccatcacc
ccttcaaacacacttctgaactcctgcaaactactacccctttcccagtcccttcctgga
tcattctcctcccatctcattcgctgtgcctgccccacccccggcacatccacggctttc
ccggctctccattggctgacgttggtcacatgctgctgcctgctgccctctctgattggt
gcaggggagacatgggacgtggtcgcagtgtgtccattccactgcgtctgtcggaacctg
tcggactctctgagcacgctctgtgcagataaaggcctgctatttgttcccccgaatgtc
gatcgacgaaccgtcgagctccgattgggtgataactacatcacagaagtgggcggggct
gacttcgccaacatgaccggattggttgatctgactctatcccggaacactatccactcc
atccgaccaatgacgttctccgatctggagagcttgcggagtttgcatttggacggtaac
cgcttgacgacgctgggaccgagggacctgttgggattggtcaatctacagcacctcatc
gtcaacggtaaccagctgaccagggtgtcggcagaagcgttcaatgatttgttattgacg
ctggaggatctggacctgtcttacaataacctcagatgggttccgtgggagtcgatccag
aacatggccagtctccacactttgaacctggatcataatctgatagaccgcatcgcagag
ggatgctttggagggctgtacaagctggctcgtctggatatgacctctaataggctgagg
accctgccacctgaccccctgttcgccaggtctcagacgggagccatcagtcccactccc
tacaacagcgtcatcagtctgaacttcggagggaacccgctacactgtaactgtgagttg
ttatggttacgcaggctggtccgagaggacgatatggagacctgcgccacgccccctcac
ctggccggcaggtatttctggtccatccttgaggaggagttcacctgtgagccgcccctc
atcaccagacacacccacaagctctgggtcctggaaggtcaaagggcaaccctgaaatgc
agagccatcggcgaccccgaaccaatcatccatttcgtctcccccgatgatcggattgtg
gcgaattccagccggacgacatcgtcccggaatggaacgttggatctcttctttacggtt
gctagggatgacggagtgtacacgtgcatagcgataaacgcggctggggaggctaccgca
acggtggatctaaatatcatcctgttgccgaatcgaaatgggaatgtcaacgttccaggg
aatgtgacggttactgggaatgctgggaattctaatggaaaaattcagggttcttcggac
attgccactggaaaaagtgtgaattccgaagttgacaatggagggaacacaagagacacg
gaagagaggagaggagaggagggagagggggatgaggagggtggtgtggtagaggaggag
gatggagggattaggatagaggaagaggaggaagaagaagaggagaggatggttgggata
cagggagtcacttctacttcagcacaggtacgatgggacctgggccaatcggctggagct
tacctggtgtggatgtttcagatacagtacaactgtacagccgatgagacactggtgtac
aggatcctcccgtctaccagcaacagtttcatgttgaagaacctggtatctggaacggac
tacaacctgtgtgtcctggccatctttgatgacatcgtcacctccttggccgctaccaag
gttcttggctgcgcccagtttagcactaaagaactctacccagaatgccgatctctacag
acccacttcctgggcggaaccctgacaatacttgtgggaggcgttgtcgtggtaacgctg
ctggtgttcacagtggcgctgatggtgcgtcaccgtgtctgcagtaaccaggacgaccac
tgtcaccatggggttgatagtgatgagttggcgtgttgccagggtgggtcattagggagt
ccggtgaaagaggcgtcggccggaggtggaggaggaggaggagtctacggccaatcaaat
ggcaacagagatgtgatgatggtggtcttgcccaatgggctgcctacaaagcagagaggg
ggcaggacgaaggagagagcaaaagagaagaagaaggacaaagagaagggaaacgagggt
gagaaagagagggagaaaggaggggccgacgtacctcctaagataccccccaaaccaaaa
ccccaaaccctccccaggtctagcagggagggagagaag
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