Oncorhynchus tshawytscha (Chinook salmon): 112238325
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Entry
112238325 CDS
T05605
Name
(RefSeq) high mobility group-T protein
KO
K10802
high mobility group protein B1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410
Base excision repair
otw04140
Autophagy - animal
otw04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112238325
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112238325
09143 Cell growth and death
04217 Necroptosis
112238325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112238325
03400 DNA repair and recombination proteins [BR:
otw03400
]
112238325
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112238325
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
112238325
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
112238325
MMR (mismatch excision repair)
Other MMR factors
112238325
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
112238325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_box_5
Toxin_20
Dicty_REP
Motif
Other DBs
NCBI-GeneID:
112238325
NCBI-ProteinID:
XP_042165278
LinkDB
All DBs
Position
LG30:complement(48776329..48784233)
Genome browser
AA seq
240 aa
AA seq
DB search
MLEKRQDTAYRIRFGVPHYSHCSAFEIQAAAFDTDIEMGKDPTKPRGKMSSYAYFVQTCR
EEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSYIPPKGE
KKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLSIGDVAKKLGEKWNNLTSEDKVPY
EKKAAKLKEKYEKDITAYRNKGKVPVSMPVKAAAPTKDDDDDDDDDDDDDDDDDDDDDDE
NT seq
723 nt
NT seq
+upstream
nt +downstream
nt
atgttagagaagcgacaagacactgcgtatcgcattcgttttggtgttccacattacagc
cattgcagtgcatttgagatccaagcggcagcctttgataccgatattgagatggggaaa
gatccaacgaagccgaggggcaagatgtcctcctatgcctactttgtccagacctgtcga
gaggagcacaagaagaaacacccggaagcttccgtcaacttctccgagttctccaagaag
tgctctgagagatggaagaccatgtctgccaaggagaaggggaagtttgaggatctggcc
aagctggacaaggtgcgttatgagagggagatgaggagctacattcctccaaagggagag
aagaagaagaggtttaaggaccccaatgcccccaagagaccatcgtctgctttcttcatc
ttctgcgctgatttccgaccccaggtgaagggggagacccctggcctgtctatcggtgat
gtggccaagaagctgggagagaagtggaacaacctaacatcggaagacaaggtgccctat
gagaaaaaggctgcaaagctgaaggagaagtacgagaaggacatcactgcgtatcgcaac
aagggcaaggtgcccgtcagcatgcccgtgaaggccgctgccccaaccaaggacgacgac
gacgacgatgatgacgatgacgacgacgatgacgacgacgatgacgacgacgatgacgag
tag
DBGET
integrated database retrieval system
