Oncorhynchus tshawytscha (Chinook salmon): 112238339
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Entry
112238339 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112238339
04518 Integrin signaling
112238339
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112238339
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112238339
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112238339
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
112238339
NCBI-ProteinID:
XP_042185910
LinkDB
All DBs
Position
LG02:8928402..9037305
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AA seq
1491 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVVLLAVVKCQDEDQDVGSCMQDGQSYSDKDVWKPEPCRICVCD
TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRGGEAPPSGDPGAKGQKGEPGEITDVVG
PRGPGGPLGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG
SLGPRGPPGPSGKPGDDGEAGKPGKGGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG
LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLSGPAGPPG
PVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIGG
SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGELGPAG
PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG
VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDTGPQGKVGPGGAAGEDGRPGPPGPMGARG
QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
ASGKDGSRGLTGPIGLPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFA
GPPGSDGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPPGCH
WFPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGXPGRQGDAGLRGAAGSPGEK
GDAGEDGPSGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR
GPPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGSTGIKGDRGNTGPAGAPGSPGANGSP
GPVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFT
GLQGLPGPPGQSGDQGASGPAGPSGSRGPPGPIGPSGKDGSNGMPGPIGPPXPRGRSGET
GPSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCN
METGESCVYPKPASIPKKNWWSSKSKAAKHIWFGETMNGGFHFSYGDESLAANTASIQMT
FLRLLSTEANQNLTYHCKNSVAYMDGAXGNLKKAVLLQGSNDVEIRAEGNSRFTYTVMED
GCTKHKGTWGKTVIEYRSQKTSRLPIVDIAPVDIGGADQEFGVDVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgtttagctttgtggattcgaggactgtactgctacttgtagcaacccaagtcgttcta
ttagctgttgtcaaatgtcaggacgaagaccaggacgtaggcagctgtatgcaggacgga
cagagctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac
acgggaactgtcctgtgtgacgaaataatctgcgaggagattaaagactgccccaaacct
gagatcccattcggagagtgttgccccatctgcgtgcggggcggggaagcccccccaagt
ggggaccccggagctaagggtcagaaaggggaaccaggagaaatcacagatgtcgtagga
ccaagaggacctggaggccctttgggccccccaggagagcagggaccacgtggagacaga
ggagacaaaggagataagggcagccccgggccccgtggcagagatggtgagcctggtacc
cccggtaaccccggcccccccggacctccaggacctaatggaccccctggccttggagga
aactttgctgctcagatggcgggaggattcgacgagaaggctggcggagcacagatgggc
gtgatgcaaggaccaatggggcctatgggtcctcgaggaccacctggaccttctggagct
cctggcccacaaggtttccaaggcaaccccggagaagctggagagcccggatcagctggc
tcgttgggtccccgtggtccacccggaccctctggtaaacctggagatgatggtgaggct
ggcaaacctggcaaaggtggtgaacgtggaccttctggtcctcagggagctcgtggattc
ccaggaacccccggtctgcctggaatcaagggccacagaggttatccaggtctggatgga
ctcaagggagagggtggagctgctggttctaagggtgagtctggtgctcccggtgagaat
ggcgctccaggaccaatgggaccgcgtggtctgcccggtgagagaggtcgtcccggaccc
tctggttctgctggcgctcgtggtaatgacggtctgtctggccctgctggtcctcctggc
ccagtcggtcctgctggtgctccaggcttccccggctctccaggttctaagggagaagct
ggccccaccggtgctcgtggacctgagggcgctcagggaccccgtggagagtcaggaacc
cctggatctcccggacccgccggcgcatctggtaaccctggtactgatggtattggagga
tctaaaggatcagctggtgctcctggtatcgctggtgctcctggcttccccgggccccgt
ggccctccaggaccccagggggccactggacctctcggaccaaagggaacatctggtgac
cctggtatcccaggtttcaagggtgaggctggacccaagggagagctgggaccagccggt
ccacaaggagcacttggccctgcaggagaggaggggaagaggggacccagaggagagccc
ggcgctgctggacctcttggacctcccggagagagaggcgcccccggtaaccgtggtttc
ccaggtcaggatggtctggctggtcccaagggagcccctggcgagcgtggagtcggcggc
gtgtccggccctaagggagccggcggtgaccctggtcgccctggcgagcccggtcttcct
ggcgcaagaggtcttactggtcgtcctggagatactggtcctcaaggcaaagttggacct
ggtggtgctgctggtgaggatggtcgccccgggccccctggccctatgggagcccgcggt
cagcctggcgtgatgggattccccggacccaagggagccaatggtgagcctgggaaggga
ggcgaaaaggggcttcttggtgccccaggtctgaggggtcttcctggaaaggatggtgag
actggagctgctggaccacctggccctgctggccctgctggagaaagaggagagcaagga
cagcctggaccttctggcttccagggtctgcccggacctcccggcccacctggtgagggg
ggcaagcccggtgacatgggtgttccaggagagggtggagctgctggtgccactggaccc
agaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcaggga
cctcgtggtctgcctggaactcctggaactgacggacccaagggagcgatcggaccaggt
ggcgcatcgggtgcccagggaccccccggtctgcagggtatgcccggagagagaggggcc
tcaggcatccccggacctaagggagacagaggtgacaacggagagaagggacccgagggt
gcttctggcaaagacggctcaagaggtttgactggtcccattggtctcccccccggccca
gctggtcccaacggagagaagggtgaatctggtccatctggaccttccggtgctgccggt
gcccgtggtgctcctggagacaggggtgagaccggacctcctgggcctgctggcttcgct
gggcctcctggatctgatggtcagcccggagccaaaggagagcagggagagggtggtcag
aagggagacgctggtgcccctggaccccagggaccctctggagctcctggaccttccgga
ccaactggcgtttctggacctaaaggtgctcgcggtgctcagggacccccagggtgccac
tggtttcctggtgctgccggtagagtcgggccacctggtcccaacggtaaccctggtgct
gctgggccctctggccctgctggtaaagatggccccaagggtgtgcgtggagacggtgga
nccccaggcagacagggagacgctgggctgcgtggagctgctggatcccctggagagaag
ggagatgctggagaggatggtccctctggtcccgatggtccttcaggtccttcaggtctg
gctggacagcgtggtattgttggtcttccaggacagcgtggagagagaggtttccctggc
ctgccaggaccctctggagagcctggtaaacaaggagctcctggtggaagcggagaccgt
gggccccctggcccagtgggaccccctggactgactggacccgctggagagcccgggaga
gagggcaacgctggttctgatggaccacctggtagagatggatccactggaatcaagggt
gaccgtggtaacaccggtcctgctggtgctcctggctccccaggtgctaatggttccccc
ggccccgtcggccccaccggcaagcagggagacaggggagaggctggagctcaagggccc
gctggacctgccgggcctgctggagccagaggaatggctggacctcaaggaccccgtgga
gacaagggtgaggctggagaaggtggagagagaggacagaaaggacacagaggattcact
ggtctgcagggtctgcccggacctcccggtcaatctggagaccagggtgcctctggacct
gccggaccaagtggatcaaggggacctcccggacccattggtccctctggaaaggatggt
tccaatggtatgcccggccccatcggacccccgngaccccgtggtcgctctggagagact
ggtccctctggtccacctggaaactccggtccccctggtcctcctggtcctcccggccct
ggtatcgacatgtctgccttcgctggtctgtctcagcctgagaaatcccccgatcccctg
aggtacatgagggccgaccaggcctccggaaacctgaggacgcacgatgccgaggtggac
gccacgctcaagtctctcaacaaccagattgagaacatccgctcccccgagggctccaag
aagaaccctgcacgtacttgcagagacctgaagctgtgccacccagactggaagagtgga
gagtactggatcgaccctaaccagggctgcaccatagacgccatcaaggtctactgtaac
atggagaccggagagtcctgtgtctaccccaagcccgccagcatccccaagaagaactgg
tggtccagcaagagcaaggctgccaaacacatctggtttggagagaccatgaacggagga
ttccacttcagctatggcgatgagagtctggcagccaacacggccagcatccagatgacc
ttcctacggctgctgtccaccgaggctaatcagaacctcacctaccactgcaagaacagc
gtggcctatatggacggggccnacgggaacctgaagaaggccgtgctgctccagggctcc
aacgacgtggagatcagagctgagggcaacagccgcttcacctacaccgttatggaggac
ggctgcacgaaacataaagggacgtggggaaagacagtgattgagtacagatcccagaag
accagccggctgcccatcgtggacatcgctcctgtggatattggaggagcggaccaagag
tttggtgttgacgtcggcgcagtttgcttcttgtaa
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