Oncorhynchus tshawytscha (Chinook salmon): 112238372
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Entry
112238372 CDS
T05605
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
112238372 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112238372 (slx4)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112238372 (slx4)
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
112238372 (slx4)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
112238372 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
zf-met
Zn-C2H2_12
UBZ_FAAP20
zf-C2H2
zf-C2H2_6
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
112238372
NCBI-ProteinID:
XP_024262724
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All DBs
Position
LG02:complement(74270479..74281056)
Genome browser
AA seq
1997 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRRKAGVTEKRSVAEPSSQDTVKDIPTKRVTSRRKKKDVGPS
SKGALGNNSEHVSSISTTCDEPNRLPSNTDKSKQAVVNGGMELGVGENGSSVAVDVAGSQ
PEDRGMGVKEKVLHRMQQFKRVNPQKLVHGERNQPEATGSESDSAAPHPLPDNEVPSTSA
SSPLPLDPQVDDSDEALALRLQEELDREAQAVAQGSVVDLEQGGLFFCQLCQKDLSGMSP
TGRTQHINRCLDESEDSAAPAPPPAPSVPECPICGKRFKSQMSRAAHLKRCSSTMGVAPA
ELLQAVQRQVAEGLTDSTANQPPQAGGSKRKGSTDPSLPGRKKPRKKPRGLDEDTMVAMA
LSHSLLEQEKEMEREMQRELQREREGGQQLPVILPHISLSPLKWRAEPSKTSKGRGKRKK
GAPPRPPPLLLVQDSETTLRRLQERVAGLLLRTRAPSPPTPTRCPSSMPSCRTGAGPLWQ
KSALRDGGPKVISEFYTPELREFLQPWVSVKMDMVFPTKAMPGSSTNLSSTESISMTKQS
IPSSQQPVSSTQAAPSSLPSTPGTGHLPVGSQTLCDLMELADEGMTLSQWGYSTPGPTRD
KENTATDFHLSGFVPESTDEPPDLCLSGFIPESSRNTESHQMRSLPQSRNTNRSSQKSVA
LSRLASDLTSMVNNPQFSDVQLQVDSGEVYFTHSFMLYARCPLLAQMVHDSGFGVQEDGM
PSAQRVLLGEVPGQAVYTLLQYLYTAHCPLTHTLLPHVQELAARFNLEELQQLCQLYPAQ
TDLHRGVEGQGDQWGDCPAQEHQSGGEEEHQDQVFMELLRSMWNEEEVEEDEDRGEEGGI
AMEGRGDGVTIEDGETNEERVNEEEMEEIYEFAATQRKRDEGKESEKEESEEEEEGGVTF
FTETEEEQEAPIQAQSLAEHSDKGELTCMMSPQTKPPSLVADMAIGDIDTDRGNPNRIKT
DLNKSEGRALERSRTATMESDRTKQFESNVTSSRSVGEVSTTKSLHSSPIVDQELNASLD
RSYSRLFSDSWGVQEEPHTSPPTQPSCHSQPHRAIQKPSRSQPPRTMVVEGARQPELTSP
PSSCSEPTRVRVDGGTRQTAIPTLQYSAIEIIDLSISPPLVPGVSALPVPGLSPGEVTDT
GARVRMKGVVGRGKVPVCKEILQEKVPSSPEDLKRESHGPYSISVPVSPPHSTKEEPELI
VLSDSSEEMEVGDLGPTSPSPPPPTHLSQNHQGYTRITTQSDTEPKKPTSKEKETIGGFV
RDPSVSPSDQGLDPDPPGYKPCSNPGSAGSTSLMDCSAEMSWLIPATPPLPSRRTSSTQT
FSSMRRTQLFPKANSSSSSSAASVFSSPTLPFRPSRQTSHPPRVSTHSAQTESSISRQKS
DSRGLRHSSLGLNHDDLSSQKYNSGSGSTVPSKSQPKRSCLPRLTPSLSVIPPPDPSTKG
TPLHNVPQPYSSTPLYSDLPKPSAPSLASPLLRDGEGDNGTRQRGRGLGISGSPWKRGGE
GSLGLSLSDPSDPSSSPHKESLTQPRENSGSPGQRRPSSESKYFHSPGDSETGGEKERGV
REESDEIMKMEELERSVVKEEEQEEEMGEDMERSSNSFQQSFLGMDEPPMAFDDSWGLNA
GGGDTDGERSQAVCFSLRLQSSGGGASPPRQGRRDGEITGTSSTFTPSPLPKAYSTPSPP
PPNTTTPQANPEINASLLDAEIWDDWGQEEDEALPLSQRVNPVALAQRVAQLKTPVAPRR
KGQQGPLVPITPMPSYSDMDTPDLKNKLNRFGVRPLPKRQMILKLKEIHQYTHQVVSSES
EDEAPSLGRPRAVGPPPTTEPTRKPVSCAQAGGFKEPGGKAAPTVSLVKLPGDEEDMEPL
SASQGSNTSSTAPSEDSERSNPEQCLSDDSDNDNITASQSASKLQDKLVAVRRFIQSDPD
LYGQILHYQPLVLSDLQARLKAAGIQLGAAKLLDYLDSQCITFTTAKPGLRGGRKRRGKG
VTRAGGRGRRGAAKMAD
NT seq
5994 nt
NT seq
+upstream
nt +downstream
nt
atggacgactctgatcaagacttcgttgacctctgctctaagttgctcaaacgagtccgc
agaaaagcaggcgtaaccgagaagagaagtgttgcagagccctcgtcccaggacactgtg
aaagacatacccaccaaaagggtgacgagtaggaggaagaagaaagatgttggcccaagt
tcaaagggagctttgggtaacaactctgaacacgtttcctccatctctaccacttgtgat
gaaccaaaccgacttccctccaatacagacaaatctaaacaagcagtggtcaatggcggt
atggaacttggtgtaggagagaatgggtcatcagtggctgtggatgttgctgggtctcaa
cctgaggataggggaatgggggtgaaggagaaagtgctacacaggatgcagcagttcaag
agagtcaatccacagaagctggtgcatggtgagaggaatcagcctgaagcaacagggagt
gaaagtgacagtgctgctccccatccactgccagataatgaagttccatccacctccgcc
tcttctcccctaccactggacccccaggtggatgactcggatgaggccctggccctgcgt
ctacaggaggagctggacagggaggcccaggctgtggcccagggtagtgtagtggacctg
gagcagggaggcctgttcttctgtcagctctgccagaaagacctgtctggcatgagcccc
acaggacgcacccaacacatcaacaggtgtctagacgagagtgaggacagtgctgccccc
gcccctcctcccgctcccagcgtcccagaatgccccatctgtggtaaacggttcaagtcc
cagatgagtcgcgcggcccacctcaagcgttgctcctccacgatgggcgtggctcctgcc
gagctgctgcaggctgtacagagacaagttgcagagggcctgactgacagcaccgccaac
caacctccgcaggccggaggttccaagcgtaaaggctccacggaccccagcctcccgggt
aggaagaagcccagaaagaagccccgtggcctggatgaagacaccatggtggccatggcc
ctgtcccactccctactggagcaggagaaagagatggagcgggagatgcagagagagtta
cagagggagagagaaggtggtcagcagctcccagtcatcctccctcacatttctctgtca
ccattgaagtggagagctgaaccaagtaagacgagtaaggggcgtggcaagaggaaaaag
ggtgcaccccctcgcccccctcccctcctcctggtccaggactcggagacaaccctgagg
cgactacaggagcgcgtggctggcctcctcctccgtacccgcgccccctcgcctcccacc
cccacacgctgccccagctccatgccctcctgcagaacgggtgctggccccctctggcag
aagagtgcgctgcgggacggagggccgaaggtcatctctgagttctacaccccagagctc
agagaatttctacagccttgggtgtctgtaaagatggatatggtgtttcccaccaaggcc
atgcctggatcctccaccaacctttcttcaacagaaagcatctctatgaccaagcaatct
atcccttcctcccaacaaccagtctcctccacccaggcagccccgtcttcgctcccttcc
accccagggacagggcaccttccagtgggcagccagactctgtgtgacctgatggagctg
gctgatgagggaatgaccctctcacagtggggctattctaccccaggacctaccagagac
aaagagaacactgctacagacttccacctgagtggctttgttcctgagagcacagacgaa
ccccctgacctgtgtctcagtggcttcatcccagagagcagtagaaacactgaaagccat
cagatgagatctcttcctcaaagcagaaataccaacaggagcagccagaaatcagtggcg
ctgtccaggctggcctcagacctcaccagtatggtgaacaacccccagttcagtgatgtc
cagctacaggtggacagtggggaggtgtacttcacccattcattcatgctgtatgctcga
tgccccctgctggcgcagatggtccatgacagtggattcggggtgcaggaggacggcatg
ccctcagcccaaagggtgttgttgggtgaggtaccaggccaggcggtatataccctgctc
cagtacctctacacagcccactgccccctcacacacaccctgctgccacacgttcaggag
ctggcagccaggttcaacctggaggagctgcagcagctgtgccagctctacccagctcag
acagacctccacagaggtgtagagggacagggggatcagtggggagactgcccagcccag
gagcaccaatctgggggagaggaggagcaccaagaccaggtcttcatggagctcctccgc
tccatgtggaatgaagaagaggttgaggaagatgaggacagaggagaggaaggagggatt
gcgatggaggggcgaggggatggcgtgaccatagaagatggagagacgaacgaagaaagg
gtgaacgaagaagagatggaggagatatatgagtttgctgccactcagagaaagagggat
gaaggaaaagagagcgaaaaggaagaatcagaagaggaggaggagggaggagtgacattt
ttcacagagacagaagaagagcaggaggctccaatccaagctcagtcattggctgaacac
tcagataagggtgaattaacatgcatgatgtcccctcaaacaaaacctcccagtttagtg
gcagacatggctattggtgacatcgacacagaccgggggaatccaaataggataaaaact
gatctcaacaaatcagaaggtagagctctagaacgttctagaacagccaccatggagtca
gacagaacaaaacaatttgaatcaaacgtcacaagctcaagaagtgttggagaggtatca
acgacaaaaagcctccactccagtccgattgtcgatcaagaactaaacgctagtctagac
cgtagctacagccgcctcttctctgactcgtggggggtgcaggaggagccccacacctcc
ccaccaacacaaccatcctgccactcccaaccccacagggctatccagaaaccctcccgc
tcccagccccccaggaccatggtagtggagggtgcgagacagccagaactcacctcccca
ccgtcctcctgctccgagcccacaagggtgagggtcgatgggggtacgagacagacggcg
atccctaccctccagtactcagccattgaaatcattgacctctccatcagtcctcctctg
gtccctggtgtatccgccctacctgttcctggtttgtccccaggggaagtgactgacacc
ggggcacgagttaggatgaagggagtggtgggaagagggaaagttcctgtgtgtaaggag
atactccaagagaaggtaccatctagtccagaggacttaaagagagagagtcatggtccg
tatagtatttctgtacccgtgtctcctcctcacagtaccaaagaagaacctgagcttata
gttctgtctgactctagtgaagagatggaggtaggggatctaggacctaccagcccctct
ccaccaccccctactcatctctcccagaaccaccaaggctacacccgaatcacaactcaa
tcagacacagaacctaagaaacccacctcgaaggagaaagagactattggtggttttgtg
agggatccttctgtctcaccttcagatcaaggcttagatccagatcctccaggttataaa
ccatgttccaaccctggttctgctggttctactagtctcatggactgttctgcagagatg
tcttggctcatcccggccactccgcccctaccgtccaggaggacgagctctacccagacc
tttagtagcatgcgtcgcactcagctctttcctaaggccaactcttcttcctcctcttct
gcagcgtcagttttctcctctcccaccctccctttcaggcctagccgccagacctcacac
ccacccagggtttctacacattctgcccagacagagtcctctatttctaggcagaaatca
gacagcagagggcttcggcattccagcttgggtctcaaccatgacgacctctcttcccag
aaatacaacagtggttctggatccacagtcccctccaagtcccaaccaaaacgctcctgc
ctaccccgcctgaccccctctctctccgtcatccccccaccagacccctccaccaagggt
actcctctccacaacgtcccccagccatacagctccactcccctttattcagatctaccc
aagccctctgctccgtctctggcctcccctctcctgagagacggggagggggacaacgga
accaggcagagagggagggggctggggatctctgggagcccatggaagagagggggagag
gggtctctgggcctatccctctcggacccttccgacccatcctcgtccccacataaggag
tcccttacccaaccgagagagaacagcggctcccccggacaacgccgaccatccagtgag
tctaaatacttccacagcccaggagatagcgagacggggggagagaaagagaggggggtg
agagaggaatcggatgagattatgaaaatggaggaactggaaaggagtgtagtgaaagag
gaagagcaggaggaagagatgggagaagacatggagaggtccagtaacagctttcaacag
agcttcctcgggatggacgagccacccatggccttcgatgactcctggggcctaaacgca
ggaggaggggacacggacggagaacgatcccaggcagtgtgcttcagtctgaggctacag
agcagcggcggtggggctagtcctccaagacagggccggagagatggagagataacagga
acatcctctacttttaccccctctcctcttcctaaagcctactccaccccctctccacct
ccacccaacaccactacaccccaggccaacccagagatcaacgctagcctcctggacgct
gagatctgggacgactgggggcaggaagaggatgaggctcttcctctctctcagagggtg
aatcctgtagctctggctcagagagtggcccagctcaagactccagtggccccccgtagg
aaaggccagcagggccccctggtccccatcacccccatgcccagctactctgacatggac
acacctgacctcaagaacaagctcaacagattcggtgtgcgtcccttacccaagcgccag
atgatcctgaagctcaaggagatccaccagtacacccaccaggtcgtcagctcagagtcc
gaggacgaggcaccttccctgggtcgccccagagccgtcgggcccccacccaccacggag
cccaccagaaagccagtgtcctgtgcccaggctggggggtttaaagagcctggtggaaaa
gcagcacctaccgtctccctggtgaaactgcctggtgatgaggaggacatggagcctctc
tctgcctctcagggatccaatacgtcctccacagcacccagtgaagactctgagaggtct
aatccagagcagtgcctctctgacgactcggataacgacaacattactgcctcgcagtct
gcctccaagctccaggacaagctcgtcgctgtccgtcgtttcatccagtcagaccctgac
ctctacgggcagatcctccactaccagcccctggtcctgtcagacctccaggccagactc
aaggccgcaggtatccagctgggggccgccaagctactagactacctggattcccagtgc
attacgtttaccacagccaagcctggactgaggggaggaagaaagagaagagggaagggg
gtgaccagggctggagggaggggaaggagaggggcagctaaaatggcagattga
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integrated database retrieval system
