Oncorhynchus tshawytscha (Chinook salmon): 112238391
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Entry
112238391 CDS
T05605
Name
(RefSeq) transcription factor SPT20 homolog isoform X1
KO
K21245
transcription factor SPT20 homolog
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112238391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112238391
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
112238391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt20_SEP
Motif
Other DBs
NCBI-GeneID:
112238391
NCBI-ProteinID:
XP_042165115
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All DBs
Position
LG30:complement(50244965..50265524)
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AA seq
691 aa
AA seq
DB search
MKQVLEYALDRAEYIVESARQQPAKRRALSGGRKSLYQKLYELYIEECDKEPELKKLRRN
VNLLEKLVSQESVSCLVVNLYPGNQGYSLMLLGKNGSDSETIRLPYEEGQLLEYLDAEEL
PPILVDLLEKSQVNIFHCGCVVAEVRDYRQSGNTKMPSFQSRHVLLRPTMQTLICDVHAM
TSDHHKWTQDDKFQLESQLLLATADPLCLDPSISVTCTANHLLYNKQKMNTHSMKRCFKH
HSRAALNRQQELSYLPTPPQLRLYDYLQRRKERKPAPSIDLKISKAGKCVDMWKQSHCQL
TVPKEIDVEKYAVVEKSVKLQESQPTVWPAEEVIDDYTFECEVGGQRTKVSIFQSVGDPL
VYGKIYCAEEDSSDLHLIHPAFLIGSKRDADRFLSQYKGVYEQDVKCQVKMSRNSGIMGQ
NQLSASREAEVDGLSALVQSSGVLGKGVKHRPPPIKLPSGSGSSSSGNLYSSAQATSGLL
KCLTPPPGTGPGSAKPQSLSRKHSVELGQGLQLGALSPMASTQRSGTPKPSTPTNTPCST
PSPPDSLLSLPPSVTPTPTDPQALLTPQQQLSLPVMTIPLPTMRTSITTETSSSQVMANP
AGLNFLNVVGSVCSPQTLMTSSQMLGPGLNLSGLGGLMPTTQSVAILAPPNAAAANGYGG
DGSSGASPRLHTASQPISKTKRSTPQPLPQS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaagttttggaatatgcattggatcgggctgagtacattgttgaaagtgctcgt
caacagccagccaagaggagagcgttgtccggagggaggaagagtctatatcagaaacta
tacgagctctacatcgaagagtgtgacaaagaaccagagctcaagaagctgcgtaggaat
gtcaacctgctggagaagctggtgtctcaggagtcagtgtcttgtctggtggtcaacctt
taccccggcaaccagggatactccctcatgctcctcggcaagaatggatctgactctgag
acgatccgtctgccatatgaggaaggacagctgttggagtacctggacgccgaggagctt
cctcctatcctggtggatctcttagagaagtcccaggtgaacatcttccactgtggctgt
gtggtagctgaggtccgagactacagacagtctggcaacactaagatgccctccttccag
agcagacacgtcctgctacgacccaccatgcagacactgatctgtgatgtccatgccatg
accagtgaccaccacaaatggacacaggatgataagttccagttggagagccagttactg
ctggccacagctgatcctctgtgtctggatccatctatctctgtcacctgtacagccaac
cacctgctctataacaagcagaagatgaacactcactctatgaaacgttgttttaagcat
cactctcgggcggcgctgaaccgtcagcaggagctgtcctacctgcccacgcccccccag
ctgcgtctctatgactacctgcagaggaggaaggagaggaagccggccccctcgatagac
ctgaagatctccaaagccggaaaatgtgtggacatgtggaaacagagccactgccaactc
actgtccccaaggagattgatgtagagaaatatgcagtggtagagaagtcagtgaagttg
caggaatctcagcccactgtctggcctgcagaggaagtgatagatgactatacgtttgag
tgtgaggtcgggggccagaggaccaaggtgtccatcttccagtcggtgggcgaccctctg
gtctacggaaagatctactgcgctgaggaagacagcagcgaccttcacctcatacatcca
gcgttcctaataggctcaaagagagatgctgatcggtttctatcccagtataaaggtgtg
tatgagcaggacgtgaagtgccaggtgaaaatgtctcggaactcaggcatcatgggacag
aaccaactctcagccagtagagaggcagaggtagatggtctatcagccttggttcagtcg
tcaggtgtgttggggaagggggtgaagcaccggcctccccccatcaaactaccctccggg
tcgggcagcagctcctcaggtaacctgtatagttcagcccaggctaccagtggtctcctt
aagtgtcttacgccccctccaggaacaggccccggctcagccaagccccagtctctgagt
aggaagcactctgtggagctggggcaggggttacagctgggggccctatctcccatggcg
tcgacacagagatcggggaccccgaagccgtccacccccaccaataccccttgttccacc
ccctcaccccccgactccctcctttccctccctccctccgtcacccccacccctacggac
ccccaggccctcctgaccccccagcagcagctgtccctacctgtaatgaccatccctcta
cccaccatgagaacctccatcacaacagaaaccagctcctctcaggtcatggctaaccct
gctggactcaacttcctcaacgtggtgggatctgtctgcagtccccagactctgatgact
tccagtcagatgttgggtcctggtctcaacctgagtggtctgggaggactgatgcctacc
acacagtcagttgcaattcttgcaccaccaaatgcagcagcagcaaatggctatggggga
gacgggtcctcgggggcgtcgccacggctacataccgccagccaaccaataagtaagacc
aagaggagcacaccgcagcccctcccccaatcatga
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