Oncorhynchus tshawytscha (Chinook salmon): 112238404
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Entry
112238404 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: stAR-related lipid transfer protein 13-like
KO
K20632
deleted in liver cancer protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112238404
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho GTPase-activating proteins
112238404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGAP
START
SAM_2
YlbD_coat
Motif
Other DBs
NCBI-GeneID:
112238404
NCBI-ProteinID:
XP_042167039
LinkDB
All DBs
Position
LG33:41371532..41488632
Genome browser
AA seq
1549 aa
AA seq
DB search
MAMCERPVDTLPVSHQPPHRHGQTLDTVTVLLEDIQGHREVEGQGQGVEVTSVVQCCDGL
SPMSTPPPLGESGDPEPMNSGSTQAQTTTNRDLDEVDMDHTHPCEADPIESGLTLDQTWD
MYEVDQTSTMSCDTEVELGTGTETTPHIQVCPTESGLVTEVNGRSGKQHGREPVEERERP
KETPSPPSSPVSSLPLSPGQTLGHVALDTPQERCLDAPGPGKGSSMDLFCIVKHKPSAIV
FSGDDNIDNVSPTRVFVTQSLDGEESLSGDEDEGGDDVEEEEEEEKDEEIPELPQYKEFL
VSHRRRNVSRNRKRQRKGQELPPTGSLIDLGSTNKTRLKAKQEEDEEEEEEEEEAERRRA
RSPWCDSMSQLMRKLDQLNLDIQEALSAASSSHSDNDQPETQQPELSAPALGRMISRGLV
HDHNTSRPSNRPPESSVSSSRQRSRPLARSRPLIRSSLHSPSHLQYRRRTGENRMTSQSE
EIEAKEACDWLRAAGFPQYAQLYEDSQFPIDILSVKRDHDFLDRDLVEPLCRRLNTLNKC
CSMKLDVSHPRKKTDDSDDDDPLAISKRWTFEWNSRRWSRLQDMHFLLGSPNESSPEGCQ
GEGRLRSTVSSESVLTDLSEPEITDISSLHSQDSLGAMLPDSVSMVSLAGPYQPPRDLSH
YNSLPIKSSRHGQGGRSPAKAFLRRMEMMRTWGPSSKRKSGSGRAPLVISGPVLHGEEPQ
ALQMLHCVPINQSEDSPHPPHQSDDNSSPIALGNGSKGQSVTSGVSSMRPCVKDSVSKPK
RGSMYLEDMELLSGAPHVRRTEAQQSPFSRNHFRSYEDLLVHIPKNHKPGTFPKALSIES
LATATNHQHQTPSPSPLHPSKGSLWTGTALSKKPPCPGAPRGSRVSVYDNVPGSHLYAST
GDLLDVDRDDHLFPHLDDIISHVSGLQQIVDHWSRSMLTEGGVGEEGERTTPSEGEGEGR
TTPREGEGEGRTMPSEGERDGVSLIDIESTGTRERRDSGVGASLTRPRXVLRWPSFRLPE
NLRQSGSALQISSQSAGQLSLLQKFSLLRLTAIMENYSMSNKHGWTWSVPKFMKRLKVPD
YKERSVFGVPLIVHTQRCGYPLPLCLQQALRHLRTHCLDQVGLFRKSGVKSRIQALREEC
ETSPDSVCYEDQSAYDVADMVKQFFRDLPEPLLTSKLGETFLHIYQYVPKEQRLQAVRAA
ILLMSDENREVLQTLLCFLRDVTSCVEENQMTPMNLAVCLGPSLFHLNILKNDNLSPRSI
QKKYATGRPDQKDLSENLAATQGLAHMITECQHLFEIPQDMVSRSHNSYMEAELLAPPLD
ELRKTHDEEDEEEEEEEEEGSYHTHMEGLVQGLLKEARDNSKGWVSRATTDHTELACKKV
GDGNPLRRWRVCVEVCAKPSEVLERLLRERPLWQTDVLQEKVLVTLGRQTDIYQYSLQSM
APHPNTDYVVLRSWRSSISKGCCVLVCVSVDYEDSPAMVSVRGVILESQYLLEPHGTGKS
RLTHICRVDLKGRSPEWYNKVFGHLCVSEAQRIRSSFLPPDPPGTETKI
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgtgtgaaagaccagtagacactcttccagtcagtcatcaaccccctcacaga
cacggacagactctggacacagtgaccgttctactggaggatatacagggtcaccgtgag
gttgaaggtcagggtcagggggttgaggttacctctgtagtgcagtgttgtgatggcctg
agccccatgtccacaccacctcccctgggggaatcaggagacccagagcccatgaacagt
ggatctactcaggctcaaaccacaacgaacagagatctagatgaggtggacatggaccat
acgcatccctgtgaagcagatcccatagagagtggactgaccctggatcagacgtgggac
atgtacgaggtggaccaaacctccacgatgagctgtgatactgaggtggagcttgggacg
gggactgagactactccacacatacaggtgtgtcctacagagtctggtctggtcacagag
gtgaatggacgctctgggaaacaacatggtagagagcctgtagaggagagggagaggcct
aaggagaccccttctccaccctcctctccagtctcctctctgcccctctctcctggccag
actctgggacatgttgcccttgataccccccaggaaaggtgtctagatgccccagggcca
ggcaagggtagttccatggacctgttctgtatcgtaaaacacaaacccagcgctatcgtg
ttctctggagacgacaacatcgacaacgtcagcccaactagagtcttcgtcacccagagc
ctcgatggagaggagtctctctcgggcgatgaggatgagggtggcgatgatgtggaggag
gaagaggaggaagagaaggatgaagagatccctgaactgccgcagtataaggagttccta
gtcagccatcgccgtagaaacgtgagcaggaacaggaagaggcagaggaaaggacaggaa
ctcccgcccactggctctctgattgacctgggctccaccaataagaccaggttaaaggcc
aagcaggaagaagatgaggaagaggaggaggaggaagaagaggctgaaaggagacgggca
cggtccccgtggtgtgattctatgagtcagctgatgaggaagttggatcagctcaatctg
gacatacaggaagcactcagcgctgctagctcctcccactctgacaacgaccaaccagaa
acacaacaaccagaactgagtgctcctgcactgggaaggatgataagcagaggcctggtc
cacgaccacaatacctccaggccttctaacagacccccagagagcagcgtgtccagctcc
agacaacgttctcgtcccctggcccgcagcagacccctgatccgttcctccctacactcc
ccctcacacctccaatacagacggagaaccggtgaaaacaggatgaccagccaatcagaa
gagatcgaggccaaggaggcttgtgattggctgagggctgcagggttcccacagtatgcc
cagctctacgaagactcccagtttcctatagatatcttgtcagtgaagagggaccatgat
ttcttggacagggacctggtggaacctctgtgtcgacgtcttaacactctgaacaagtgt
tgctccatgaaactagacgtcagccaccccaggaagaaaactgatgattcagacgacgat
gacccgctagccatcagtaagagatggacctttgaatggaacagccggcgctggtcccgc
ctccaggacatgcacttcctgctgggctcgcccaatgagagcagtcctgaggggtgccag
ggggaggggcgactgaggagcacagtgagcagtgagagcgtcctgacggacctgagtgaa
ccagagatcacggatatatcctctctgcacagtcaagactctctgggagccatgcttcct
gactctgtctctatggtctcactggcaggaccctaccagcccccaagagacctgtcccac
tacaactctctaccaatcaaaagcagccgtcacggccagggagggcggagtccggcaaag
gccttcctgcgtcgcatggagatgatgcgtacctgggggccgtcctccaagaggaagtca
ggaagtgggcgggcgccgctcgtcatcagtgggccggtcctacatggggaggagccccag
gcattacagatgctccactgtgttcccatcaatcaatcagaggacagtcctcatcctccc
caccaatcagatgacaactcgtcccctatcgccctcggtaatggcagcaagggccaatcg
gtgacgagcggtgtgagttccatgcgtccctgtgtgaaggattctgtctccaagcctaaa
agaggaagtatgtacctggaagacatggagctgctctctggcgccccccatgttcggagg
actgaagcacaacagagcccgttcagcaggaaccacttccgttcatacgaggacctgctg
gtccacatccccaagaaccacaaaccaggcaccttccccaaagccttgtctatagagagt
ctagccacagccaccaaccaccagcaccagaccccttctccctccccactccaccccagc
aaaggctccctctggacgggtacggctctgtccaagaagcctccctgtcctggagctccg
cggggcagcagggtgagtgtgtatgataacgtccccgggtctcacctgtacgcgtccaca
ggtgacctgctggatgtggaccgagacgatcacctgttcccccacctggatgacatcatc
agtcacgtcagcggcctgcagcagattgtagaccactggagtcgcagcatgctgacggag
ggtggggtgggggaggagggggagaggaccacacccagtgagggggagggagaggggagg
accacgcccagggagggggagggagaggggaggaccatgcccagtgagggagagagagac
ggggtctccctgattgacatagagtctacagggaccagagagaggagagactcaggagta
ggagcttcccttaccagaccacggtgagttctgcggtggccgagcttccgcctccctgaa
aatctgcgccaatcaggctccgcactgcagatcagtagccaatcagcaggccagctcagc
ctgctccagaagttctctctgctccgactcacagccatcatggagaattactccatgtct
aacaaacacggctggacctggtctgtccctaagtttatgaagcgtttgaaggtccctgac
tacaaggagagaagtgtgtttggtgttcccctcatcgttcacacacagcgctgtggttac
cctctacctctttgtctacagcaggccctgagacatctcaggacgcactgtcttgaccag
gtgggtctgttccgtaaatctggtgtgaagtctcgtatccaggcgttgagagaggagtgt
gagaccagtcctgacagtgtgtgttacgaggaccagtcagcgtacgatgtagcagacatg
gttaaacagttcttcagagaccttcctgaacctctactgaccagcaagctgggagagacc
ttcctacacatctaccaatatgtccctaaggagcagaggttgcaggccgtgagggcggcc
atcttgctgatgtcagacgagaacagggaagtgctccagacgctgctctgcttcctgcgt
gatgtcacttcctgtgtagaggagaaccagatgacccctatgaacctggctgtgtgtctg
ggcccctccctgttccacctcaacatactgaagaatgacaacctgtcccccaggtcgatc
cagaagaagtatgctacgggccgtccggaccagaaggacctgagtgagaaccttgccgcc
acacagggcctggctcacatgatcactgagtgccagcacctgtttgagatcccacaggac
atggtaagccggtcccataactcctacatggaggctgagttactagcgccccctctggac
gagctgcgtaagacacatgacgaggaggacgaggaagaggaggaggaggaggaggaagga
tcctaccacacacacatggaggggctggtccagggactactaaaagaggccagagacaac
agcaaaggatgggtatcccgggctaccactgaccacactgaactggcctgcaaaaaggtg
ggtgatggtaacccactgcggcggtggcgtgtgtgtgtggaagtgtgtgcgaagcccagt
gaggtgttggagaggctgctgcgggagcgccccctgtggcagacagacgtactgcaggag
aaggttctggttaccctgggcagacagacagacatctaccagtacagcttgcagagcatg
gccccacaccccaacactgactacgtagtactgaggtcgtggcgtagcagcatttctaag
ggttgctgtgtgttggtgtgtgtatcagtggactatgaggacagtccagccatggtgtca
gtcagaggagtgattctagaatcacagtaccttctagaaccccacggaaccgggaagtcc
cgactcacacacatctgcagagtcgatctgaagggcaggtctccagagtggtacaacaag
gtgtttggtcacctgtgtgtctctgaggcccagaggatccgttcctccttcctccctcca
gaccccccaggcaccgagaccaagatctga
DBGET
integrated database retrieval system
