Oncorhynchus tshawytscha (Chinook salmon): 112238437
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Entry
112238437 CDS
T05605
Symbol
itgb5
Name
(RefSeq) integrin beta-5
KO
K06588
integrin beta 5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
otw04148
Efferocytosis
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04810
Regulation of actin cytoskeleton
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112238437 (itgb5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112238437 (itgb5)
04148 Efferocytosis
112238437 (itgb5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
112238437 (itgb5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112238437 (itgb5)
04810 Regulation of actin cytoskeleton
112238437 (itgb5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112238437 (itgb5)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112238437 (itgb5)
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
112238437 (itgb5)
Cell adhesion molecules [BR:
otw04515
]
Integrins
Integrin beta subunits
112238437 (itgb5)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
PSI_integrin
Integrin_b_cyt
EGF_integrin
I-EGF_1
EGF_2
vWA_SIBA-E
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
112238437
NCBI-ProteinID:
XP_024262788
LinkDB
All DBs
Position
LG03:50903288..50975799
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AA seq
804 aa
AA seq
DB search
MWSPWQLVYRTAFGCMVLEIFIHNVAQGLNVCMSGSATSCEECLLISPSCAWCAQEEFGR
ARTLTSRCDLSQNLQKRGCEAHNIESPSSTIMVVKSEPLSSKGSGPTQYDVIQIMPQKIS
LNLRPGDQTSFEVQVRQVEDYPVDLYYLMDLSLSMKDDLDTIRNLGTKLADEMRKLTSNF
RLGFGSFVDKNMSPFSYTATKYQDNPCNGYKLFPNCVPSFGFRHLLSLTDKVDRFNEEVQ
KQMVSRNRDAPEGGFDAILQAAVCKERIGWRKEAFHLLVFATDDVPHLALDGKLGGLVQP
HDGECHMNENNEYSGSTKMDYPSLALLGEKLAENNIYLIFAVTKRLYVIYKNFTALIPGT
TVEILDQDSKNIIQLIVNAYNNIRSKVELTVWDQPEDLSLSFTATCQDGQPLPGLRKCAD
LKIGDTVSFNVSVDARGCPAPGTQQRFTIKPVGFKNRLEVSVDYRCACGCTDQTQANSSR
CSSIGQYTCGTCHCDPGYLGARCECQEGEAGSMYLSACREAEGKQICGGRGECSCNQCLC
YESEFGKIYGTFCECDDFSCARHKGILCSGHGECHCGECKCHAGYIGDNCNCSTDTSSCV
SDDGKICSGRGSCVCGHCQCTEPGAFGDTCEKCPTCPDACGTKRECIECRLFDSGRLSDN
QTCQRLCKDEIITVETLKTEDPNAVLCLYKTENECVMKFMYSEHANGMSVLTALKEPECG
AAPDAMTVLLAVVGSILLVGIVLLAIWKLVITVHDRREFARFQSARCRARYEMASNPLYK
QPISSHPIETDFIMYGKSYNGAAH
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcccatggcagttggtgtaccgtacagccttcggctgcatggttctggaaata
tttattcacaatgttgcacaaggactcaatgtttgtatgagtggcagcgctacatcctgt
gaagaatgcctcctcatctctccgagctgcgcctggtgcgcgcaagaggagtttggcagg
gcgaggaccctgacgtcacggtgtgacttgagtcagaacctgcagaagagaggctgtgag
gcccataacatagagagtcctagtagcacaatcatggtagtgaagagcgaacccctcagc
tccaaaggctccgggccgacccagtatgatgtcatccagatcatgccccagaagatctcc
ctgaatcttagaccaggtgaccagacctcattcgaagtgcaggtgcgtcaggtggaggac
taccctgttgacctgtactacctgatggacctgtctctgtccatgaaggatgacctggac
accatcaggaacctgggcaccaagctggctgacgagatgaggaaactcacctcaaacttc
agactaggctttggctccttcgtagacaagaacatgtcaccattctcttacacagccacc
aagtaccaggacaacccctgcaatggatacaagctgttccccaactgtgtcccttccttc
gggttccgccacctcctctccctgacggacaaggtggatcgcttcaacgaggaggtgcag
aaacagatggtgtctcgcaacagggacgctccggagggaggcttcgacgccatcctgcag
gctgccgtctgtaaggagaggataggttggaggaaggaggccttccacctgctggtgttt
gccacagacgatgtgcctcacctggccttggacggtaaactgggaggcctggtccagccc
catgatggggagtgccacatgaatgagaataacgaatacagcggctccaccaagatggac
tatccctctctggctctgttgggagagaagctggcggagaacaacatctatctcatcttc
gccgtgactaaaaggctctatgtcatttacaagaatttcacagcactgatacctggaact
acagtggagattctggatcaggactccaagaacatcatccaactcatcgttaacgcctac
aataacatccggtccaaagtggagctgacggtgtgggatcaacctgaagacctcagtctg
tccttcacggccacctgtcaggacggacagcccctaccaggcctcaggaagtgtgccgac
ctcaagatcggagacacggtgtccttcaacgtgagtgtggatgctaggggctgccctgcc
cctggcacccagcagagattcaccatcaaacctgtgggtttcaagaatcgtctggaggtg
tcagtggactaccgctgtgcctgtggctgcaccgaccagacccaggctaacagtagccgc
tgcagctctatcggacagtacacctgtggtacctgccactgtgacccgggctacctgggc
gcccgctgtgagtgccaggagggcgaggctggcagcatgtacctgagcgcctgtagagag
gcggaggggaagcagatctgtggtgggagaggggagtgcagttgtaaccaatgcctctgc
tacgagtcagagttcgggaagatttacgggaccttctgcgagtgtgacgacttctcctgc
gcccgacacaagggcatcctctgctcaggtcacggagagtgccactgtggggagtgtaag
tgccatgcgggctacatcggagacaactgtaactgctccacggacacgtcttcctgtgtg
tctgatgacgggaagatctgtagtgggcgaggcagctgtgtgtgcgggcactgccagtgt
acagaaccaggggccttcggggacacctgcgagaaatgccccacctgccccgatgcctgt
ggcaccaaaagggaatgcatcgagtgccggcttttcgactccggaagactgtccgacaac
cagacgtgccagcggctatgcaaggacgagatcatcactgtggaaacgcttaaaacggaa
gacccaaacgctgtcctttgcttgtacaagacggagaacgagtgtgtgatgaagttcatg
tactctgaacacgccaacggcatgtcagtcctcaccgcgctcaaagagccagagtgtggc
gcagcgccggatgccatgacggtcctcctggcagtggtgggcagtatcctgctggtgggc
attgtgctgctagccatctggaagctggtcatcaccgtgcacgaccgacgggagtttgcc
cgcttccagagcgcacgctgccgcgcacgttacgagatggcctccaaccccctctacaag
cagcccatctccagccacccaatagagaccgacttcattatgtatggcaagtcttacaac
ggagcagcccactga
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