Oncorhynchus tshawytscha (Chinook salmon): 112238475
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Entry
112238475 CDS
T05605
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112238475 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112238475 (cstf3)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
112238475 (cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_19
TPR_6
TPR_16
Motif
Other DBs
NCBI-GeneID:
112238475
NCBI-ProteinID:
XP_042172688
LinkDB
All DBs
Position
Unknown
AA seq
711 aa
AA seq
DB search
MSTEATADQAAEYIPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
FPSSGRFWKLFIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYSKYEEGINVHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NSPQEAVQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDVWYEAAQY
LDQSSKLLAEKGDMNNSKVFSDEAANIYERAIGTLLKKNMLLYFSFADYEESRLKHEKVH
SIYNRLLAIEDIDPTLVYIQYMKFGRRAEGIKSGRIIFKKAREDMRTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPEK
SGEIWARFLAFESNIGDLASILKVERRRFTAFKDEYEGKETALLVDRYKFMDLYPCSASE
LKALGYKDVSRAKLAALLQTETVVTPSAPTQKDEADRKPEYPKPDTSQMIPYQPRHLAPP
GLHPGVFPGPVILMKLLPPPTCSLLGPFVQVDELMESFRRCTLPETVDAAVELITGRQPD
AGGEGNGSMENHAMTKSLKRPNADSDEEEDKGAVAPPVHDIYRARQQKRIR
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtccacggaagcaaccgccgaccaggcagctgagtatatcccggagaaggttaagaaa
gcagagaagaagttggaagaaaacccatatgaccttgacgcatggagcattctgattcga
gaagcacagaaccaaccaatagacaaagcaaggaagacgtatgaacgacttgtggcccag
ttcccaagctcgggcagattctggaaactattcattgaagcggagatcaaggcaaaaaac
tatgacaaggtagaaaagttgtttcagagatgtctgatgaaggtgctgcacatcgacctg
tggaaatgctacctctcctacgtccgagagacgaaaggaaagctacccagctacaaagag
aagatggcgcaggcgtatgactttgcgctggataaaatcggcatggagatcatgtcctac
cagatatgggtggactacatcaacttcctcaaaggagttgaggcggttggttcatacgct
gaaaaccagcgaatcacggcggtgcgcagggtctaccagaggggctgtgtgaaccccatg
atcaacatcgagcagctctggagagactacagcaagtatgaggagggcatcaacgtacat
ttggccaagaagatgattgaggaccgcagcagagactacatgaacgctaggagagtggcc
aaggaatatgagactgtgatgaagggtctggataggaacgccccctcggtgcccccacag
aactccccccaggaggcggtgcaggtggagatgtggaagaagtacatccaatgggagaag
agcaacccgctccgcacagaggaccagacactcatcactaagagagtgatgtttgcctat
gagcagtgtctgttggtgctgggtcatcaccctgatgtgtggtatgaggctgcccagtat
ctggaccagtccagtaaactactggcagagaagggggacatgaacaactctaaggtgttc
agtgacgaagcagctaacatctacgagcgcgccatcggtactctactgaagaagaacatg
ctgctgtacttctcattcgctgactatgaggagagtcgattgaagcatgaaaaggtccac
agcatctacaaccgtctgctggccatcgaggacatcgaccccacgctggtctacatccag
tacatgaagtttggcaggcgggccgagggcatcaaatcaggccgcatcatctttaagaag
gccagggaggacatgcgcacgcgtcaccatgtctatgtgactgcagcactgatggagtac
tactgcagtaaggacaaatcagtggccttcaagatatttgaactgggcttgaagaaatat
ggagacattccagagtatatacttgcatacatcgattacctctcacaccttaatgaggac
aacaacaccagagttctgtttgagcgtgttctcacctcgggaagcctgtcgccagagaag
tctggtgagatctgggcacgtttcttggcctttgagagtaacatcggggacctggccagt
atcctgaaggtggagcgcaggcgtttcacggccttcaaggatgagtacgaaggcaaggag
acagccctgctggtggacagatacaagttcatggatctgtacccctgttctgccagcgag
ctcaaagccctcggatacaaggacgtgtcccgtgccaaactggcggcgttgctccagaca
gagacggtggtgactccatcggctcccacgcaaaaggacgaggccgaccgcaaaccagag
taccccaaacctgacaccagccagatgatcccctaccaaccacgacacttggcccctcca
ggactgcacccaggggtgttcccaggcccagtcatcctgatgaagctactgcctccaccc
acctgttcactgttggggccctttgtgcaggtggatgaactgatggagagcttcaggaga
tgtacactaccagagactgtagatgcagcagtagagttgataacgggcaggcagcctgat
gctggcggagaagggaacggttccatggagaaccacgccatgaccaagtcactgaagaga
cccaatgcagactctgatgaagaggaggacaagggcgctgtggccccacccgttcacgac
atctaccgcgctcgccagcagaagaggatccggtga
DBGET
integrated database retrieval system
