Oncorhynchus tshawytscha (Chinook salmon): 112238496
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Entry
112238496 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: probable JmjC domain-containing histone demethylation protein 2C
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112238496
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
112238496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JmjC
zf-C5HC2
Motif
Other DBs
NCBI-GeneID:
112238496
NCBI-ProteinID:
XP_042172592
LinkDB
All DBs
Position
Unknown
AA seq
3032 aa
AA seq
DB search
MLKALTVFLLFQTFRPLVGKATLGSITAVEFFSDRQLDFLSDHGAYQPYQEEVDSLSPVL
RDNPQLHEEVRFWLKDQKVQDIFLQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFSRN
MVVMNDQVLEPQNVDPSMIQMTFLDDVVHSLLKGENIGIQSRRRSRSNQNNSAHGHYTRA
QANSPRPVMNSSGGAVKQGSGVTTQQGQGQGGSQSQQAPAQHSPCQEQTQHRGPGFSRRK
GSDSSVPDDDFKGDNVDCNERAGRGGEDDGEDRTRDFFKSTSSKQVAVNKRRKAEEEEEE
EEKKSGLKRLRSETTVRSDFSESSDSEMSTKRTRTADSSSFSEQNSEEELKGKTGQEGHK
TQGSKTGKESALTGSLSPGVRSFRRRSFSSHQPTGSRGHPCDNLNDRGNGLCPSEGQGEC
IMENNSTMKSQTHPQSKDQYTSAEVVSRTQTPSQYIIDITAEDANAHMASRENSEAVSAL
LASQNPSEPSYLSEPSRHLVLNPSVAPPSPLRKSPSECDLRNQTPSVSECDLRNQTPLVS
ECDLRNQTPLVLECDLRNQTPSVSECDLRNQTPLVLECDLRNQAPSVSECDLRNQAPSVS
ECDPRNQSPSVSECDLRNQTPSVSECDLRNQSPSVSECDLRNQTPSVSECDLRNQTPSVC
RKPEVKHDIAGSLGSKMGLVHSVVIRPIASVSESAAVVEREKQLYSSMLPCIKNASLADE
ARKSYKLSPSPDVPKPLPSPEALKPKPLCSPDIVKSKTQSVLETCSKAKPLTSPEVSKHK
GRYPDNTPRSSFKPVLARGTESPGSCTKSPLIIDKNEHFTVYRDPALVRPNQETNHVSYL
HPQLHHLHASSHASCLTPSSTHHHTSHSHHHLLSGVLSGLPPGPLLGGHPRLDSSGLGHL
GLAHHHPVSQPQTHSHTSASYNQLGLYPIIWQYPNETHSYSPRLNLPGSKWVHPENPVSS
ETNMRRNTASPWLHHQVPVSSSDSLDQLSHVPVPIRPASADPHRSDPHPHLSEPHRSDPH
RLIKINPHASPLCHRPRPLEIFTGSKYQDLKGFVDPIRTITLAHLKQEQDRSRTPTGKDS
HLHQLYLEACNKQQQQRMAQQQQQEAGQRDRASMYKEENRRILQESIEVAPFTAKIRSSE
TDREPNPYPRIPSLPSLPHPYPRIPSLPSLPHPQRPHQEKETEPPAADLYQFKXAVPAQS
PPPSNYFTTLSNSVVNEPPRLYPSKELNSYFDKVSREQESAAASSLSLGGGAVFSSKSLS
KPPPLIKHQADGEGLLGKISEQLNQQVSLSNMQRYRLSTIVSPVSPDLSPSSSQSQNQTQ
SQTRTHCQSQTRTHCQTQSQTQSQTRTHCQTQSQTRTHCQTQSQSQTQAQLRCMPALHRA
PVFHPPIQQTLDRKEAGYGRLSPPTLTPIQPVSSAGKVSEQQKPPTLLPELREVSAVCKG
GAAMTSSEVWRAGDSQSHDKLGWHSERSPGRKPGATTASVIVRPSTCIKYDGSPGAKTSS
SAKDSLMGRMFPGGRPQTVCLKLAYERDRESGGKVILPNTNLEEAVCVQQYNNNFMRVSQ
SQGTFPVSVSAAANSVCNRSSDVTRAVSNMAPYGVLSRRQERTYCGPNTSSASRTESCGP
RGRAFHSGPGLEPRTELQQQEGSSSRTSSPNLHPGPSLASSTQASPNPSQSYYGSFIHLK
KHKAALAAAQQSRGPSSSTSGSGPESLIEPSNSKALHISPPPPLASASAQNHRTTASPGP
HQAGASPSPGPLPNGQPAQMNQSQSQPNYHKLKKAWLTRHSEEDRNINTMMKTEEADKAV
TTTVSPSVSKSVTTTVSPSLSKAVTTTVSPSVSKSVTTTVSPSVSKAVTTTVSPSVSKAV
TTTVSPSVSKSVTTTVSPSVLKAVTTTVSPSVSKSVTTTVSPSVSRLLPPLXPSVSKAVT
TTVSPSVSKAVTTTVSPSVSKAVTTTVSPSVSKAVTTTVSPSVSKAVTTPVSPSVSKAVT
TTVSPSVSEMEMIKPCTVTLIASTSSDVEMKIEEVKGQEDKMAAEDRITRRGSKRVYDHD
SASESGEDSDASESSKQEQRAKRQPKPTYKKKQNDMRRRRGDGEKDEDELKPNRIFRSAX
EKTKLKLSSNNGIPRSVLKDWRKVKKLKQTGESFLQDDSCSEIGPNLQKCRECRVVRSKK
GEQPAHSPVFCRFYYFRRLSYSKNGVIRVDGFSTPDQFDEEALSLWAPDVYEENELDPDS
SKYILSYIGDQFCQMVTTENTAATWIKKTAKMAWKRAVRGVREMCDACEATLFNIHWVCH
KCGFVVCLDCYKAKERKTSKDKELYAWLKCVKGQQHGHKYLMPTQIIPGTVLTEVVSAMH
LFREKYSIRSPIVCTGKHNPLLSKLPATNGVSQVLQNVLNHSNKISLCNVKTEPGQLNPI
QGKAETNGGSSPASDPSSDSKPTPPESQSPLHFLADLTEQKSLEDKKENKESPLGKVGKE
EKVSSLESLHCRASSLVSNITEQGSTLRDLLTTTAGKLRLGSTDAGMAFAPVYSTAAQMG
KSGRSMPNILDDIIASVVENKIPASRGAKLSLKLEATTTTTEDREVKTERIERKKQPGTG
TGPNPGTGPNPGTGPNPGTGPNPGTGTGPNPGTGTGPNPGTGTGPNPGTGTEELPEPKPQ
LEKALQLHADIPHCWLYDRRLLWLKDHRHPGNWKLFRECWRQGQPVLVTGLHKPLNAALW
KADSFNLEFADHQGDLLNCKDGLVSNSGINEFWDGFEDLTKRPKSKDGDTVVYRLKDWPS
GEEFMALMPSRYDDLMRNLPLPEYCDPEGNLNLASHLPSFFVRPDLGPRLCCAYGVVASQ
EQDFGTANLHREVSDIVSVLVYVGVAKGNGVLSKTGVLKRLEEEDLDDSVKKRLKDSSET
PGALWHIYISKDVEKIKDFLHKVAKEQGVEISAEHDPIREPGWYLSRKLRQRLWEEHDVQ
GLTVVQFLGDSVLIPAGALHQVQNLHSCVQVINDFVSPEHVFHSFHLTQELRSSREEPNY
EDKLQVKNILFHSVKDALTSLRRYSQEEEENS
NT seq
9099 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaggctctaacggtgtttttgttgtttcagacgttcagacctctggtggggaag
gctactctgggttccatcacggctgtagagttcttctctgacagacaactggacttcctg
tctgaccacggagcataccagccctaccaggaggaagtggacagtttgagtcctgttctc
agggacaaccctcagcttcatgaagaggtcaggttctggctcaaagatcaaaaggttcag
gacatttttttgcaaggtccatattcattaaatggttaccgagttcgtgtttacagacaa
gactcggccactcagtggttcacagggatcatcacacatcatgacctcttcagccgtaat
atggttgtgatgaatgaccaggttctagagccccagaacgttgacccctctatgatccag
atgacctttctggacgatgtggtccactctctgctgaaaggagagaacatcggtatccag
tcccgacgcaggtcccgttccaaccagaacaactctgcccacggtcactacacccgcgcc
caagccaacagccccagaccagtcatgaactcctctggcggggcagtgaagcaggggtca
ggggtcaccacccagcagggtcaaggtcagggcgggtcccagagccagcaggccccagcg
cagcactccccttgccaggaacagacacagcaccgcggacctggcttctccaggaggaag
ggatctgacagcagtgtccctgatgatgacttcaagggagacaacgtggactgtaacgag
agagcagggagaggaggtgaggatgatggtgaagatagaacaagagacttctttaaaagt
acgagcagcaagcaggtggctgtgaacaagcggaggaaagcggaggaggaagaggaggaa
gaggagaagaaatcaggtttgaaaagactgagaagcgagactacagtgaggtctgacttc
tctgagagcagtgactctgagatgtctaccaagagaaccaggacggcagactcctcctct
ttttcagagcagaactcagaggaggagctaaaaggaaagaccggccaggaggggcacaag
acccagggttctaagactgggaaggagtctgctctgacaggcagtctctcccctggggtg
aggagcttcagaaggcggagtttcagcagtcatcagccgacagggagcagaggtcatccc
tgcgacaacctcaacgacagggggaacgggctctgcccctctgagggccaaggggagtgc
atcatggagaacaacagcactatgaaatcccagacccatccccagtccaaggaccagtac
accagcgctgaggtggtctccaggacccagactccctctcagtatataatcgacatcaca
gcagaggatgctaacgcacacatggcctcccgggagaactctgaggccgtctcggccctg
ctggcctcccagaatccatctgagccctcctacctctctgagcccagcagacatttggtg
ctgaacccctctgtggcccctccctctccccttcgtaagagcccctcggagtgtgacctt
aggaaccagactccctcagtgtcagagtgtgacctcaggaaccagactcccttagtgtca
gagtgtgaccttaggaaccagactcccttagtgttagagtgtgaccttaggaaccagact
ccctcagtgtcagagtgtgaccttaggaaccagactcccttagtgttagagtgtgacctt
aggaaccaggctccctcagtgtcagagtgtgaccttaggaaccaggctccctcagtgtca
gagtgtgaccctaggaaccagagtccctcagtgtcagagtgtgaccttaggaaccagact
ccctcagtgtcagagtgtgaccttaggaaccagagtccctcagtgtcagagtgtgacctt
aggaaccagactccctcagtgtcagagtgtgaccttaggaaccagactccctcagtgtgt
aggaagccggaggtaaagcatgacatagctggcagcctgggcagtaagatggggctagtc
cattcagtggtgatcagacctatagcatcagtcagtgagtctgctgctgtagtagagaga
gagaagcagctatattcctccatgctgccctgcattaagaacgcctcattggccgacgag
gccaggaagtcgtacaagctaagcccctcccctgatgtccccaagcccctcccctcccca
gaggccctgaagccgaagcccctctgctctcctgacattgtcaagtctaaaacacagagt
gttctggagacttgttctaaagccaaacccctcacctccccagaggtgtccaagcataaa
ggccgttacccggacaacacccctcgctccagctttaagccagtcttggcccgagggact
gagtcgccaggatcttgcactaagagtccgctaatcatcgataagaacgagcatttcacc
gtgtaccgggaccctgcgcttgtccgtcccaaccaggagaccaaccacgtgtcctatctg
cacccccagctccaccacctccatgcctcctcccacgcctcctgcctcaccccctcttcc
acccaccaccacacatcccactcccaccaccacctcctctccggggtgctctctggcctg
cctccaggccccttgctggggggtcatccccgactagactcctcagggctggggcacctg
ggactagctcatcaccaccctgtctctcagccccagacacacagccacacctcagcctca
tacaaccagctggggctgtatccaatcatctggcagtaccccaatgagacccactcctat
tccccaagactcaacctgcccgggtccaagtgggtgcaccctgaaaaccctgtcagttct
gagaccaacatgaggaggaacacggccagcccttggctacaccaccaggtccctgtctcc
tcctctgacagcctggaccaactgagccacgtcccggtccccatccgaccagccagcgcc
gaccctcaccggtccgacccccatccccacctttcagaaccacaccgttcggacccccac
cggctcattaagatcaacccccacgccagccccctctgccaccggccaaggccgctggag
atcttcacagggagtaagtatcaggatttgaagggttttgtggaccccatcagaaccatc
actctggcccacctgaagcaggagcaggaccgcagcagaaccccgactgggaaggacagt
cacctgcaccagctctacctggaggcctgtaataaacaacagcagcagaggatggcccag
cagcaacagcaggaagcagggcagagggaccgggccagtatgtataaggaggagaacaga
cggatcctccaggagagcattgaggtggcccccttcaccgctaagatccgctccagtgag
accgacagggagcctaacccctacccccggatcccctcgctcccctccctgccccacccc
tacccccggatcccctcactcccctccctgccccacccccagcgcccccaccaggagaag
gaaacggagccccctgctgcagacctgtatcagtttaaancagcagtcccagcacagtct
cccccccccagtaactacttcactaccctgtccaacagtgtggtcaacgagccaccgcgt
ctctacccctctaaagagctcaactcatactttgacaaggtgagcagggagcaggagtct
gcagcagcctctagtctctctctgggaggaggggcagtgttcagctccaagtccctgtcc
aaaccccctcctctcatcaaacaccaggctgatggggagggtctgctagggaagatatca
gagcagctgaaccagcaggtaagcctatccaacatgcagaggtatcgtctcagtaccata
gtcagccctgttagtccagacctctcgccttcctccagtcagagccagaatcagacccag
agccagacccgaacccactgtcagagccagacccgaacccactgtcagacccagagtcag
acccagagccagacccgaacccactgtcagacccagagccagacccgaacccactgtcag
acccagagccagagtcagacccaagcccaactaaggtgtatgccagcactgcaccgtgcc
cctgtgttccaccctcctatccagcagacactggacaggaaggaggcgggctacggccgt
ttgtctccacccaccctgacccccatccagccagtcagctcggccggtaaggtgtctgag
cagcagaaaccgcccacccttctgcccgagctacgggaggtcagcgccgtgtgtaagggc
ggggcagcgatgacctcatccgaggtgtggcgagccggcgactctcagagccacgacaag
ctgggatggcattctgagaggagccccggcaggaagcctggggccaccacggcatctgtt
atcgtccgtccctctacgtgtataaagtacgacggctcgccaggcgccaagacctcttcc
tcggccaaggactctctgatggggaggatgttcccaggcggcaggcctcagacagtctgt
ctgaaactggcctatgagagagacagggagtctggagggaaggtgatcctgccaaacact
aacttggaggaggctgtttgcgtgcagcagtacaataacaactttatgagagtgtcccag
tctcagggaacctttccagtctctgtctcggctgctgccaactctgtgtgcaataggagt
agtgatgtgactagggcagtctccaacatggctccctacggtgtgctgagtagaagacaa
gagagaacctactgtgggcccaacacctccagcgctagcaggacagagagctgtggccct
cggggcagagccttccactcagggcctgggttagaaccaaggaccgagctccagcaacag
gaggggagctcctccagaacctcatcccccaacctgcaccccggccccagcctggccagc
agtacccaggcctctcccaaccccagccagtcctactatgggagctttatccatctgaag
aagcacaaggcagcgttggcggcagcccagcagtccagaggtcctagcagcagcaccagt
ggtagtggtcctgagagcctgattgagccatctaacagtaaagctcttcacatctcccct
ccacctccccttgcctcagcctcagcccagaaccacagaaccacagcaagcccaggacca
catcaagcaggagctagccccagccctggccccctccccaatggccagccagcccagatg
aaccagagccagtctcaacccaactaccacaagctgaagaaggcctggctcaccagacac
tcagaggaggacagaaacataaacactatgatgaaaacagaggaggctgataaggctgtt
accaccactgtgagcccctctgtgtccaagtctgttaccaccactgtgagcccctctttg
tcgaaggctgttaccaccactgtgagcccctctgtgtccaagtctgttaccaccactgtg
agcccctctgtgtcgaaggctgttaccaccactgtgagcccctctgtgtcgaaggctgtt
accaccactgtgagcccctctgtgtctaagtctgttaccaccactgtgagcccctctgtg
ttgaaggctgttaccaccactgtgagcccctctgtgtcgaagtctgttaccaccactgtg
agcccctctgtgtcaaggctgttaccaccactgtagccctctgtgtcgaaggctgttacc
accactgtgagcccctctgtgtcgaaggctgttaccaccactgtgagcccctctgtgtcg
aaggctgttaccaccactgtgagcccctctgtgtcgaaggctgttaccaccactgtgagc
ccctctgtgtcgaaggctgttaccacccctgtgagcccctctgtgtcgaaggctgttacc
accactgtgagcccctctgtgtctgagatggagatgatcaagccttgcaccgtcactctg
attgcctctacctccagtgatgtggagatgaagatagaagaggtcaaaggtcaggaggac
aagatggccgctgaggacaggattacgcggcgtggcagcaagagggtgtacgaccacgac
tcggcctcagagagcggagaggactctgacgccagcgagagcagcaagcaggagcagagg
gcgaagaggcagcccaaacccacctacaagaagaaacagaacgacatgcgcagaaggaga
ggagacggagagaaagatgaggatgagctgaaacccaacaggatctttaggagcgccnag
gagaagaccaagctgaaactgtccagcaacaatggtatcccccgctctgtgctgaaggac
tggaggaaggtgaagaagctgaagcagacgggggagtcgttcctgcaggatgactcgtgc
tccgagattggacccaacctgcagaagtgtcgggagtgtcgtgttgttcgcagcaagaag
ggggagcagccggctcattcccctgtcttctgtcgcttctactacttccgccgcctgtcc
tacagtaagaatggagtgatccgtgtggacggcttctccactccagatcagtttgatgag
gaggctctgtccctctgggctcctgatgtatacgaggagaatgagttggacccagactcc
tccaagtacatcctctcatatataggagaccagttctgtcagatggtcaccactgagaac
actgctgctacatggatcaaaaagacagccaagatggcctggaagagggctgtgagaggg
gtccgggagatgtgtgacgcgtgtgaagccaccttgtttaatattcactgggtttgccac
aaatgtggcttcgtggtttgtctggactgttacaaggcaaaggagaggaagacctccaaa
gacaaagagctgtacgcctggctgaagtgtgtcaagggacagcagcatggtcacaagtac
ttgatgccaacacagattatcccaggaactgttctgacagaggtggtgagcgccatgcat
ctgttcagggagaagtacagcatcaggtctcccattgtctgtactgggaaacacaaccct
ctactcagcaagctgcctgctaccaacggagtctctcaggttctccagaacgtgttaaac
cacagcaacaagatctctctatgtaacgtgaagacagagcctgggcagctgaaccccatc
cagggtaaagctgagactaacggaggctccagccctgcctcagacccctcctctgactcc
aaaccgactcccccggagtcccagagccctctccacttcctggctgacctgactgaacag
aagtctctggaagacaagaaagaaaacaaggagtctcctctgggtaaggtgggcaaggag
gagaaggtcagtagcctggagtctctccactgtagagcgtctagtctggtgtctaacatc
acagaacagggctctactctaagagacctcctgacgaccaccgctggtaaactacgtctg
ggctctactgatgctggcatggccttcgctcctgtatactccaccgcagcacagatgggg
aagagtggccgtagcatgcccaacatcctggatgacatcatcgcgtccgtggtggagaac
aaaatccctgccagccgaggagccaagctgagtctgaagctggaggccaccaccaccact
acagaggacagggaggtgaagacggagaggattgagaggaagaagcagcctgggactggg
acaggtcctaaccctgggacaggtcctaaccctgggacaggtcctaaccctgggacaggt
cctaaccctgggacggggacaggtcctaaccctgggacggggacaggtcctaaccctggg
acggggacaggtcctaaccctgggacggggacagaagagcttcctgaacccaagcctcag
ctagagaaggccctgcagctccatgctgacatcccccactgctggttgtatgatcgcaga
ctgctctggctgaaagaccatcgacaccctggcaactggaagctgttcagagagtgttgg
agacagggacagcctgtcctggtgactgggctccataagcctctgaatgcagctctgtgg
aaggcagacagcttcaacctggagtttgctgaccatcagggagacctgctgaactgtaaa
gatggacttgtctcgaactctggaatcaacgagttctgggacggcttcgaggacctcacc
aagagacccaagtctaaagacggagacaccgtggtgtacaggctgaaggactggccatca
ggagaggagttcatggccctgatgccttccaggtatgatgacctgatgaggaatctgccc
ctgcctgagtattgtgaccctgaagggaacctcaacctggcctctcatctacccagcttc
ttcgtacgcccagacctcggaccacgcctctgctgtgcttatggagtggtagcgtctcag
gagcaggactttgggacagctaaccttcacagggaggtctctgacatcgtctctgtcctg
gtgtacgtaggggtggccaaggggaacggagtcctgtccaagacgggagtgttgaagaga
ctggaggaggaagacttggacgacagcgtgaagaagagattaaaggattccagcgagaca
cctggagccttgtggcacatctacattagcaaagatgtggagaaaattaaagactttctg
cacaaggttgctaaggagcagggggtggagatttcagcagagcacgacccaatcagagag
ccgggctggtacctgagcaggaagttgcgtcagcgtctgtgggaggagcatgatgtgcag
ggcttgaccgtggttcagttcctgggggactctgtcctcatcccggccggggcgctgcac
caggtgcagaaccttcacagttgtgtccaggtgataaatgactttgtgtctccagagcat
gtattccactccttccacctgacacaggaactgagatcctccagagaagagcccaactac
gaagataaactacaggtaaagaacatcttgttccactctgtgaaggatgcattgacgtcg
ctgaggaggtacagccaggaggaggaagagaactcctga
DBGET
integrated database retrieval system
