Oncorhynchus tshawytscha (Chinook salmon): 112238545
Help
Entry
112238545 CDS
T05605
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03030
DNA replication
otw03410
Base excision repair
otw03420
Nucleotide excision repair
otw03430
Mismatch repair
otw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112238545 (pold1)
03410 Base excision repair
112238545 (pold1)
03420 Nucleotide excision repair
112238545 (pold1)
03430 Mismatch repair
112238545 (pold1)
03440 Homologous recombination
112238545 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
otw03032
]
112238545 (pold1)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112238545 (pold1)
Enzymes [BR:
otw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
112238545 (pold1)
DNA replication proteins [BR:
otw03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
112238545 (pold1)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
112238545 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
112238545 (pold1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
POL3_N
zf-C4pol
REV3_N
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
112238545
NCBI-ProteinID:
XP_042171491
LinkDB
All DBs
Position
Unknown
AA seq
1088 aa
AA seq
DB search
MDAKRRNSGLPRGGASQAKRGKTGDWEDSPSNFEEELALFEEADMEAEEREGQAGHDVIP
VGELFSADLNPRWRRPQAAPLNPDSDTLVFQQIDLDYYLGAVVAGMPGQSQGNVPIIRMF
GVTDSGNSVCCHVHGFAPYFYIPAPNGFTSDHLSEFKRELNSAVLKDMRSNKDNISVTVL
AVDITRKESMYGYHGKRIADFLCITMAMPRLIAPAKRLLEQGFKFGHFPIQSFSSYEANI
DFEIRFMVDSDVVGCCWIELPKGKYRVREERMLGKTDAHHPGKVSLCQYEVDVGWTQLIS
HPAEGEYQRIAPLRVLSFDIECAGRKGIFPEAEKDPVIQIASMVQRQGEKEPFIRTVFTL
QSCSSIVGSQVLCFTKESQLLQSWAEFVRTVDADIITGYNIQNFDLPYLLNRAATLKVKL
FPYLGRVQGIKSVLRDSSFQSKQMGRRENKILNMEGRVQFDLLQVLLRDYKLRSYTLNAV
SFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMAR
VTGVPLTYLLSRGQQIKVVSQLLRQAMKQGLVMPVVKPEGGEDYTGATVIEPEKGYYSVP
IATLDFSSLYPSIMMAHNLCYTTLLQKGSAEKLGLTPEDFIKTPTGDLFVKSSVRKGLLP
DILEDLLSARKKAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEIS
QSVTGFGRQMIEQTKQLVESKYTTANGYQADAKVIYGDTDSVMVKLGVDTVSRAMEVGRE
AAEWVSSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSSSADTHDKMDCKGIETVRRDNC
TLVANLINTCLQTILIDRDPQGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYAAK
QAHVELAERMKKRDAGSAPQLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIPIDTQYY
LEQQLSKPLLRIFEPILGESKAESVLLKGDHTRCKTVLTSRVGGLMAFATKRSACIGCRA
VLKDDAAIFHLSTLEERFSRLWTQCQRCQGSLHEDVLCTSRDCPIFYMRKKVQKDLDDQE
KLVSRFGW
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggatgctaaaaggcggaatagtggtctgccgaggggcggagcgtcccaggccaagcgt
ggtaaaactggggattgggaagacagcccgtcaaacttcgaggaggaactcgccctgttc
gaagaagccgatatggaggcggaggagagggaaggacaggcggggcatgacgtcatccct
gttggtgagctgttctctgctgacctcaacccccgatggcgtaggccgcaggccgcccct
cttaacccggactctgacaccctggtcttccaacagattgacctcgactactatttaggg
gctgttgtggctggcatgccaggtcagtctcaggggaatgtaccaataatccgcatgttt
ggggtgactgacagcgggaacagtgtgtgctgccacgtgcacggctttgccccctatttc
tacatccctgcccccaatgggttcaccagtgatcacttgagtgagttcaaaagggagctt
aactctgctgtgctgaaggacatgcgctccaacaaggacaacatatcggtcactgtgctg
gcggtggacatcacacgcaaagaaagtatgtatggttaccatgggaaacggattgcggac
ttcctttgcatcactatggcaatgcctcgtctgattgccccggcgaagaggctcctggag
cagggatttaagtttggacatttccccattcagagcttctcttcctacgaggctaacatc
gactttgagatcaggtttatggtggacagcgatgtggtgggttgctgctggattgagctg
cccaaagggaagtaccgggtgagggaggagaggatgttggggaagacggacgctcaccac
ccaggcaaggtgtctctgtgtcagtatgaggttgatgtgggatggacccagctgatcagt
cacccagcagagggagagtaccagaggatcgctcctctcagggttctcagctttgacatt
gagtgtgctgggagaaaagggatttttccagaggcagagaaagacccagtgatccagata
gcctccatggtgcagcgacagggagagaaggaacccttcatccgcaccgtcttcaccctc
cagtcctgctccagcatcgtgggctcccaggtcctgtgctttactaaagagagccagtta
ctacagagctgggctgagtttgtgaggacagtggatgcagacatcatcactgggtacaac
atccagaactttgaccttccctacctgctgaacagagcagctaccctgaaggtcaagctg
ttcccctacctgggcagagtacagggcatcaagtcagtcctgagagactctagtttccag
agcaaacagatgggccgcagagagaacaagatcctcaacatggagggacgagttcagttt
gacctgctccaggtgctgctgagggactacaaactgcgctcatacacactcaacgccgtc
agcttccacttcctgcaagaacaaaaggaggatgttcagcattctatcatcacagatctg
cagaatggtaatgagcagacccggaggcgcctggcagtgtactgcctgaaggatgcctac
ctgcccctgcgtctgctgcagaagctgatgtgtgtgatcaactacatggagatggccaga
gtcaccggggttcccctcacctacctgctctccagaggccagcagatcaaagtggtgtcc
cagctactgcggcaggcaatgaaacaggggctggtcatgccagtggtgaagcctgaggga
ggtgaagactacactggagctacagtcattgagccagagaaaggatactacagcgtcccc
atcgccaccctggatttctcctccctgtatccctccatcatgatggcccacaacctctgt
tacaccaccctgcttcagaagggctcagcggagaagctgggtttgaccccagaggacttc
atcaagactcccacaggagacttgtttgttaagagctcggtgaggaagggacttctgcct
gatatcctggaggacctgctctctgccaggaagaaggccaaagcggagctgaaaaaggaa
acggatcctttcaagaaacaggtccttgatggtcgacagctcgctctcaaaatcagcgcc
aactcagtctatggctttacaggggctcaggtgggcaagctgccctgccttgagatctca
cagagtgttactgggtttggcagacagatgattgagcagactaaacagctggtggaatcc
aagtacaccaccgccaacggttaccaagccgatgccaaggtcatctatggggacacggac
tccgtcatggtcaaactgggcgtggacactgtgagcagggccatggaggttgggagggag
gcggcagagtgggtctcctcccacttcacccctcccatcaaactggagtttgagaaggtg
tactacccctatctgttgatcaacaagaagcgctacgcaggcctctacttctcctcaagc
gccgacactcacgacaagatggactgcaagggtatcgagacggtccgcagagacaactgt
accctggtggccaatctgatcaatacctgcctgcagaccattctgatagacagagatccc
cagggtgcggtggcccacgccaaagaggtgatctctgacctgctgtgtaaccgcatcgac
atcagccagctggttatcaccaaggagctgacccgcacagcccaggagtacgctgccaag
caggcgcatgtggagctggctgagaggatgaagaagagagacgcaggtagcgccccccaa
ctgggagacagagttccctatgtcatcatcaaagctgccaaaggagtagcagcatacatg
aagtctgaggatccaatctatgttctggagaacaacattcccattgacacccagtactac
ctggaacaacagctctccaagccactgctccgcatctttgagcccatcctgggagagagc
aaagcagagagcgtcttactgaagggggatcacacgcgctgtaagacagtgttgacctcc
agggtgggggggctcatggcctttgccaccaagaggagcgcctgtattggttgcagagca
gtgctgaaggacgatgcggctatcttccacttaagtactctggaggagcgcttctctcgc
ctgtggacacagtgtcaacgctgtcagggctctctccatgaggatgtgctctgtaccagc
cgggactgtcccatattctacatgaggaagaaggtgcagaaagatctggatgatcaggag
aagctggtgtctcgctttggatggtga
DBGET
integrated database retrieval system
