Oncorhynchus tshawytscha (Chinook salmon): 112238597
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Entry
112238597 CDS
T05605
Name
(RefSeq) protein jagged-1b isoform X1
KO
K06052
jagged-1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04330
Notch signaling pathway
otw04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
112238597
04371 Apelin signaling pathway
112238597
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
otw04090
]
112238597
CD molecules [BR:
otw04090
]
Proteins
112238597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
MNNL
hEGF
DL-JAG_EGF-like
DSL
EGF_2
JAG1-like_EGF2
EGF_CA
Pox_A14
Motif
Other DBs
NCBI-GeneID:
112238597
NCBI-ProteinID:
XP_042161731
LinkDB
All DBs
Position
LG25:complement(46221321..46384305)
Genome browser
AA seq
1270 aa
AA seq
DB search
MILRLGSVVGVAAFCLHALLLWFYAKVVEGTGQFELDILSMNNRNGELLNGQCCDGSRIT
GDRKCRMDECDTYFKVCLKEYQSRVSAAGPCSFGSGSTPVLGGNVFSLKSSARNERSRIV
LPFSFAWPRSYTLIVEAMDANNDTSGGDGQVIEKASHSGMINPSHQWQKLSHNGPIGQFD
YQIRVSCDEHYYGFGCNKFCRPRDVFFGHYTCDYNGNKTCLEGWSGLECNTPICRQGCST
EHGHCKEPDDCKCLYGWQGQYCDQCNPHPGCIHGTCVEPWQCLCDTNWGGHLCDKDLNFC
GTKQPCLNGGTCSNTGPDKYQCSCVEGYSGVNCERAEHACLSNPCSNGGSCVETSQGYGC
VCGAGWSGPSCSINVDECSPNPCNHGGTCQDLVHAYKCHCPPQWTGKTCRIDANECDSKP
CVNANSCRNLIGGYFCECDAGWTGLNCDINLNDCKDQCHHGGTCMDLVNGYRCVCPAGYS
GDHCERDVDECAGAPCLNGGRCQDQVNGFTCLCLAGFSGHFCQLDIDYCFANPCQNGALC
FNVAKDYYCGCSEDYEGKNCSHLKDHCHTTTCKVIDSCTVAVGSNSTPGGERYISSNVCG
PHGRCRSQAGGQFSCDCQEGFRGTYCHENINDCESSPCGTGGTCIDKVSVYQCICGDGWE
GDHCEINIDDCSTSPCHNGGTCRDLVTDFFCECMNGWKGKTCHSRESQCDEVNCNNGGTC
HDEGDTFQCKCSPGWEGATCNIAKNSSCLPNPCQYGGTCVTIGDSFTCVCKEGWEGDTCK
QNTNDCNPHPCYNSGTCVDGDNWYRCECTPGFAGPDCRININECQSSPCVFGATCVDEIN
GFHCLCPQDRSGPRCQDVTGRPCSGNSRVTPDLAKWDEDCNTCQCFNGKVVCTRIWCGLR
SCRVKGHGSRGGGVGCLSGQSCVPIREEQCFIRPCLGQGECHPSSPPPNKCHPSSGYHDN
SCANVTLTFTKETMPKGLSIEAVCKQLRQLYVVKNVSSEYSVSITCDPSTSASNEIHLSI
YTVDQWMDNSPIKEITERIIDLVSKRHGNNSIITAIAEVRVQRTPSTSHTDYMVPLLSSV
FIVLWILVLVSVFLYCMHRRRKHGNGASSSAATDDNTTNNVREQLNQIKNPINVKHAGSG
HLTTSVVIKDYEDKNLIVAKPNSLPTHWWSGRIRASMEAWGPTGPATGTSGPRCSPTTGT
SGPRCSPAPNTLTGLINRTTEPWRRHTASTGWTTSYSRKLYSRRQEVACKPCVKNSPFLD
VMVIPARWFF
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgattttgagactgggctcggttgttggcgttgctgctttttgtttacatgcgttattg
ttgtggttttatgcaaaggtggtggagggaaccggtcagttcgagttggacatcttatcg
atgaacaaccggaacggcgagcttcttaacgggcagtgttgtgacggttcacggatcacc
ggggatcggaaatgcaggatggatgagtgtgatacgtattttaaagtgtgtttgaaggaa
taccagtcgcgggtctcggctgcaggaccgtgcagtttcgggtccggatctacgcctgtc
ctgggaggaaatgtgttttctttgaagagctctgcgaggaatgaaagatccaggattgtt
ttgccgttcagttttgcctggccaaggtcatacacgttgatagtggaagccatggacgct
aataacgacacgagtggtggtgatggtcaggtgattgagaaggcgtcccactctgggatg
atcaaccccagccatcagtggcagaagctcagccacaacggtcctattggtcagttcgac
tatcagatccgggtcagctgtgacgagcactactacggcttcggatgcaacaagttctgc
cgaccccgagacgtgttcttcgggcactacacctgcgactacaacgggaataagacctgt
ctggagggctggtctggactagaatgtaacacacctatctgtaggcagggctgcagtaca
gaacatggacactgcaaagagccagatgactgcaagtgtctgtatggctggcaggggcag
tactgtgaccagtgtaatcctcaccctggctgtatccatggaacctgtgttgaaccatgg
cagtgtctgtgtgataccaactggggaggacatctctgtgacaaagatctgaacttctgt
gggaccaaacagccctgtctgaacggaggaacctgcagcaacacgggacctgacaaatac
cagtgttcctgtgttgagggctactctggagtcaactgtgagagggcagagcatgcgtgt
ctgtccaacccctgctctaatggagggagctgtgtcgagaccagtcagggttatgggtgt
gtatgtggagcgggttggagcggaccctcctgtagcatcaatgttgatgagtgctctcct
aacccctgtaaccacggtgggacctgtcaggatctggttcatgcttataagtgtcactgt
cctcctcagtggaccggcaagacctgtcgcatagatgccaacgaatgcgacagcaagccc
tgtgtcaacgccaactcctgccgcaacctgattggtggatacttctgcgagtgtgacgct
ggttggacggggctgaactgtgacatcaatctcaacgactgtaaagaccagtgccaccac
ggaggaacctgcatggacttggtgaacgggtaccgctgtgtatgtcctgcgggttactct
ggagaccactgtgagagagatgtggatgaatgtgccggcgctccctgtctgaacggcggg
cgatgccaagaccaggtcaacggattcacctgcctctgtctggccgggttctctggacat
ttctgccaattggatatagactactgcttcgccaacccctgtcagaacggtgctctatgc
ttcaacgtggctaaagactactactgtggctgttcagaagactatgagggaaaaaactgc
tctcacctcaaagaccactgtcacaccaccacgtgcaaagtgattgacagctgcacggtt
gccgtgggatccaacagtacccctggaggagagcggtacatctcctccaacgtgtgtggt
cctcacggacgctgtcggagccaggctggaggacagttcagctgtgactgtcaggagggc
ttcagaggcacatactgtcacgagaatattaatgattgtgagagcagcccgtgtggtact
ggaggaacctgtatagataaagtcagtgtgtaccagtgtatctgtggagacggctgggag
ggggaccactgtgagatcaatatagatgactgcagcactagtccatgtcataatggagga
acatgtcgagacctggtgactgatttcttctgtgagtgtatgaacggctggaaggggaag
acctgccactcccgtgagagccagtgtgacgaggttaactgtaacaacggagggacatgt
catgatgagggagacaccttccagtgcaagtgttcccctggatgggagggggctacgtgt
aatatagctaagaacagcagctgtcttcctaacccctgtcagtacgggggaacatgtgtg
accattggggactccttcacctgcgtctgcaaggagggctgggagggagacacctgtaaa
cagaataccaacgactgtaatccccacccatgttataacagtgggacctgtgtggatggt
gataactggtatcgatgtgagtgcactccagggttcgctgggccagactgcaggatcaat
atcaacgaatgccagtcctcgccgtgtgtgtttggtgctacctgtgttgatgaaatcaat
ggcttccactgcctgtgtccccaagaccgatcaggaccacgttgtcaggacgtgacaggg
agaccgtgctcagggaacagtcgtgtcacccctgatttagccaagtgggatgaggactgc
aacacctgccagtgctttaatgggaaggttgtctgtactcgaatatggtgtggccttagg
tcctgccgagttaaaggccacggtagcagaggaggtggggtcgggtgtctgtctggtcag
agctgtgtaccaatcagggaggagcagtgtttcatccgaccgtgtctgggtcagggggag
tgccacccctcctctccaccgcccaacaaatgccaccccagctccggttaccacgacaac
agctgtgctaacgtaacacttacgttcaccaaagagaccatgcccaaaggtctgagtatt
gaggcagtgtgtaagcagctgagacaactgtacgtggtcaagaatgtgtcctctgagtat
tctgtttccataacctgtgacccttcaacctctgccagcaacgagatccatctcagcatc
tacacagtggaccagtggatggacaattcacctataaaggagataacagagaggatcatc
gatctggtgtctaaacgccatggcaacaacagcatcatcaccgccattgctgaggtcaga
gtgcagcggacgccgagcactagccacaccgactacatggtccccctcctctcttcagtc
ttcatcgtcttgtggatcctggtgctggtctccgtcttcctgtactgcatgcatcgccgg
cggaaacatggcaacggagcctcgtcgtccgctgcgacagatgacaacaccaccaacaac
gtccgtgagcagctcaaccagatcaagaatcccatcaacgtgaaacacgccggcagcggc
catcttacgacgtcggtggtcatcaaagactacgaggataaaaacttgatcgtcgccaag
ccaaacagcctgcctacacactggtggagcgggaggatcagggcctcaatggaggcctgg
gggccaacgggcccagcgacggggacgtcaggaccgcggtgcagcccaacgacggggacg
tcaggaccgcggtgcagcccagctccaaacaccctaactgggttaataaacaggacaaca
gagccctggagacggcacacagcatcaacaggatggactacatcgtatagcaggaaatta
tatagcaggaggcaggaagtagcatgtaaaccctgtgtaaagaattcccccttcctggac
gttatggtcatcccggcaaggtggttcttctga
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