Oncorhynchus tshawytscha (Chinook salmon): 112238610
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Entry
112238610 CDS
T05605
Name
(RefSeq) synaptopodin isoform X1
KO
K21112
synaptopodin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112238610
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
112238610
NCBI-ProteinID:
XP_042159445
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Position
LG21:39802581..39849344
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AA seq
1143 aa
AA seq
DB search
METERGHMSVRRGVSWSPGGGRKSLQGGQGRDVDTGNRESNASWEKRDYRGIKGQVTSTS
TNQLARKTNLTRSASLSEKELKEARVRSQIIAAQLTVPSGCSNSRGVQLFNRRQQRVNAF
TLESCGERTREEEREERDGDTRNNNLTWEEERGGPSEGTETDRQLDCSGIKQPLWSPPSG
SEVTGSDVMKDPGDEHIYEEVETVTQERHFQPVNERQGEEEEREREEIYEDIEGEVKDEI
MSVNENNTGPVREEVGMNRGSYTYPTAPPETRNGFHNTQSSAGEIQNGGRVSMSLSRQAP
TIVNRTARPFFSPPTVQPKSPEARSPVMDNNIPPAPSYPTPTLPPASSDSTPPLPPFTAT
RPVAFSPPPPPPSYPMPPLPAFPIHPPPPSQSLSIPPAMSTVMFPRSTPVPQYNPPPTAA
PVSQYLPPNPPVNHNIPPPSSPRPNTFVPFTPQPIGQQNQQQPIKTGILEEGAAAIRRSS
TARKSMFTFKEKPVMAPNPELLSLVQGNDDRKKHGLRSVPDSAPEEELLALGAEASNFLA
REEVKAEAANVPEWSSCLKSSRTREPRGQHQPEQILTNASGKGAELFAKRQSRMEKYVVE
NQNVSGGGGGQMRSPSPTASLPPSWVYPSNMPGRVKAIANNTDLSARLTRTLQTPQPSNR
RPSQQAQTPAPVPEEPPLENGCTKIEMDLSRHKPYQLNSSLFIFNPVQDSTSTLLSSLPR
GAPPPPKPLVSSEAYSRQASLPSSNPPSHNYNSLPRFRPTMSPSLQPPSGGIGGGVNYPP
QHGGTPQLRDPRITSPVSVFSPERVASPRSSVQAPRPTFSAKRAGIEPQTRKESPPTPTH
TTPTRTPQFTRRFSSPEGPPTPSGVWSPTPQTSITSSSSSRPQHQGTTTPTSPVSPPWET
RCQSPAVVNQTTKPFSTASLSRPKPSTTTSPISPVSPWGSRCQSPNINQTTKPFSTTTTI
SNSSSSRPSHQGTITSPLSPSPLSPPWGSRCQSPIVSPNNSKANHRLLAKNIINAAKRKN
SPSPGALSGHNLPISPLGDNTTHQHHQGYDHSSSSSKPPFSPYQSRAMGCQSPPFASPPP
TPTGVIRSPVRLYNTRSLTDSDASVESEDSGLRSPGLQRTHNTCPRGWGGSLRVKRGSFG
TDL
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggagacggagaggggtcatatgtctgtgaggaggggggtaagctggagcccaggtggg
gggaggaagtcccttcagggggggcagggcagggatgtggacaccggcaacagagagagc
aatgcatcttgggagaagcgggactacagaggaatcaaaggacaggtgacatcgacctcc
accaatcagctggctcggaaaaccaacctgacacgtagcgccagcctatcagagaaggag
ttgaaggaggcgagggtgaggtcacagatcattgctgcccagttgaccgtcccgtctggc
tgctccaactcccgcggagtccagctcttcaaccgccgccagcagagagtcaacgccttc
acgctagagagctgcggggaaagaacgagggaagaggagcgagaggagagagacggagat
accaggaacaacaacctgacatgggaagaagagcgagggggacctagtgaggggacagag
acagacagacaactggactgcagcgggataaaacaaccactctggtcaccaccctctggc
agtgaggtcaccggaagtgacgtcatgaaggacccaggtgacgagcacatctacgaggaa
gtggaaacagtgacacaggagagacacttccagccggtgaacgagagacaaggggaggag
gaagagagagaaagagaggaaatatacgaggatattgagggtgaagtgaaggatgagatt
atgtcagtaaatgaaaacaacaccggtccagtcagagaggaagtggggatgaataggggg
tcatacacataccccacagctccccctgagacccgtaatggcttccataacacccagagc
tctgctggagagatccaaaatggaggccgagtttctatgtccttgtccagacaggccccc
accatcgtcaaccggacagccagacccttcttctcccctcccaccgtacaacccaagtcc
ccagaggccaggagtcccgtcatggataacaacatacctccagctccctcttatcctacc
ccaactcttcccccagcttcctcagactccactccccctctccctcctttcactgccact
cgccccgtagccttctcccctccgccccctcctccctcataccccatgcctcctctccca
gccttccccatccatcctcctcctccctcccagtctctctccattcctcccgccatgtct
accgtcatgttccctaggtctacacccgtcccccagtacaaccctcctcctacagctgcc
ccagtgtcccagtatctaccccccaaccctcctgtcaaccacaacatccctcctccaagt
tcccctagacccaacacctttgtccccttcacccctcagcctataggccaacagaaccag
cagcagccaatcaaaacgggaatcctggaagaaggggcggcggccatcagacgatcgtcg
acagccaggaagtccatgttcacctttaaggagaagcctgtcatggcacccaatcctgaa
ctcctctctctggtccaggggaacgatgataggaagaagcatggcctccgctccgttccc
gactcagccccagaggaggagctgctggctctgggggccgaggcctctaacttcctagcc
agggaggaggtgaaggcggaggctgccaatgtgccggagtggtcctcctgtctcaagagc
tccaggaccagggagcccagggggcagcaccagccagagcagatcctgaccaacgcatca
gggaagggggccgagctgttcgctaagcgccagtccaggatggagaagtacgtagtggag
aaccagaatgtgtccggtggtggaggtggtcagatgaggtctccgtctcccacagcatct
ctgccgccatcttgggtctatccatcgaatatgcctggccgggtcaaagctattgctaac
aacactgacctcagcgccaggctgacccggaccctccagacccctcagccctcgaacagg
aggcccagccagcaggctcaaactccggccccagtccccgaggaaccacccttggagaac
ggctgcaccaagatagagatggatctctccaggcacaagccctaccagctcaactcctcc
ctgttcatcttcaacccagtccaggactctaccagcaccctgctgagctctctgccccgg
ggggccccgccaccacctaaacccctggtctcatctgaggcctactccaggcaggcctcc
ctgccctcctccaaccctccatcgcacaactacaacagcctgccccgcttcaggcctacc
atgtccccttcacttcagcccccatcaggaggaattggaggtggggttaactatcctcct
caacacgggggaactccacagctgagggaccccaggatcacctctcctgtctctgtcttc
tctccggagagagtggcttctcctcggtcgagcgtccaggcacccagacccaccttctct
gccaagagggcagggatcgaaccccagacgaggaaggagtcacctccaaccccgacccac
accacccccaccaggacaccccagttcacccgtcggttcagcagcccagagggacccccc
actcccagtggggtttggtcccctaccccccagaccagcatcacctcctcctcctcttcc
aggccccaacaccagggcaccaccacacccacctcccctgtctccccaccctgggagacg
aggtgccagtcccccgcggtggtcaaccagaccaccaaacccttctctacagcctcttta
tccaggcctaaaccatccactaccacctcacctatatcgcctgtatctccctgggggtcc
cgctgtcaatcccctaacatcaaccagacaaccaagcctttctccaccaccaccaccatc
tccaactcttcctcttccagaccctctcaccaaggcaccatcacctctcctctctccccc
tcacccctgtcccctccctggggttccagatgccagtctcccattgtcagccccaacaac
tccaaggcaaaccatcgcctgttagccaagaacatcatcaacgcggccaaacgtaaaaat
agcccgtccccaggtgctctgagtggccacaatctcccaatctccccgctaggtgacaac
accacccaccagcaccaccagggctacgaccacagtagcagcagctccaaaccccctttc
agcccctaccagtccagggccatggggtgccagtctccccccttcgccagccctcctccc
acccctacaggggtgatccggtccccagtaaggctctacaacaccaggtccctcactgac
tcggatgcttcggtggagtcggaggactctgggctgaggtctccaggactgcagcgtacc
cacaacacctgtccccggggctggggcggcagcctgagggtgaagaggggcagttttggc
accgacctatag
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