Oncorhynchus tshawytscha (Chinook salmon): 112238672
Help
Entry
112238672 CDS
T05605
Symbol
clasp1a
Name
(RefSeq) CLIP-associating protein 1a isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112238672 (clasp1a)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112238672 (clasp1a)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
112238672 (clasp1a)
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
112238672 (clasp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
XMAP215_CLASP_TOG
HEAT
HEAT_EZ
Cnd1
Sec7-like_HUS
Dopey_N
ParcG
MMS19_N
TAN
MMS19_C
Motif
Other DBs
NCBI-GeneID:
112238672
NCBI-ProteinID:
XP_042175486
LinkDB
All DBs
Position
LG03:51984858..52083137
Genome browser
AA seq
1658 aa
AA seq
DB search
MEVNMEYCLAQVVQKDLGRKVQVGQELIDYIMDKDKSQDLEQDQTALDRMVDGIATTWVN
SSNFKVALLGIDLLSALVTRLQDRFRNHVGTVLASLIDRLGDSKDQVRDQDQILLLKIME
QAASPQYVWDRMLGGFKHKNNRTREGACLCLISTLNMYGAQGLTLSKIVPHICNLLGDPT
SQVRDAAMGCLVEIYRHVGERVRMDLSKKGLPQSRLNVIFSRFDEVQRSGNMIPSSGSDK
NFDDEDSVDGGRSSSSASSSKAPPSGRRAVAAASVRRPSSATGPGKISAKDAAAGAVDEE
DFIKAFEEVPTIQIHSNRDMEDNLSKVREVLSDDKNDWEHRVVALKKVRSLLVAGALDYD
SFPQQLRLLEAPLKLSAKDLRSQVVREACITLGYLSTLLGNKFDHCAETLMPTLLNLVPN
SAKVMATSGMAAIRLILRHTHYSRLIPIITSNCTSKSVAVRRRSYEFLELLLLEWQTHTL
ERHVAVLTETIKKGIHDADSEARSVARKCYWGFHGHYSREAEHLFQALESTYQKALQSHL
KSSDSVVSLPQSDRSSSSSQESLNRPLSVKSAIGGSMTRGKMVSSRVNSNSGGSLQRSRS
DVDVNAAASAKSRLITVPSASPFSSAAALPPGSYASLDGTPGKIDTGRVRTRRTSSGNAV
GASATVTDSRGRSRAKMMSQSQRSRSANPTGGGKARTSSNQTGSRSSSPGKLLGHSSGYG
RISRPPSASSTPADKRSKVPRSQGCSRDSSPNRLGLARLCGKALVPGTPLSSYNTLARSR
IPRPSMSQGCSRDTSRESSRDTSPARGFKPLASRRTSRSTSALSTADPHSQSDRFGLIHQ
ARISASVNAMRVLNTGTEVEAAVADALLLGDSRNKRKPMRRRYESPGIYSDDDANSDASS
ACSERSYGSRNGGIPHYLRQTEDVAEVLNHCASSNWSERKEGLLGLQNLLKSQRILSRVE
LKRLCEIFTRMFADPHSKRVFSMFLETLVDFILVHREDLQDWLFVLLTQLLKKMGADLLG
SVQAKVQKALDITRESFPFDQQFNILMRFIVDQTQTPNLKVKVAILKYIESLGRQMDPTD
FVNSSETRLAVSRIITWTTEPKSSDVRKTLHNWVVEELSGRSGTAALLEGHLEERCKQAA
QVVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLKNSSNTSSVSSPSNTIGRTPPR
HTPSRTSPLTSPTNCSHGGLSPSRLWGGCWSGDGLSKHPPPPHPPPPPSTPSGPALRVLR
RAYSPSMLEYDTENMNSDEIYSSLRGVTEAIQSFSYRSQEDLNEPRGKRDDAVGREGVAS
SPGSDARLGLDVVEGGRTALDNKTSLLNTPSPRSFSGPRAREFAPYGYGDTITSSYDKSA
LKEAVFDDDVEQFRDCRRQDSSGENKMVLPKGFAPGSQDHSDLVADLLKELSNHNERVDE
RKGALVELLKITREDSLAVWDEHFKTILLLLLETLGDKDHTIRALALRVLKEILRNQPAR
FKNYAELTIMKTLEAHKDSHKEVVRAAEEAASTLAGSIHPEQCIKVLCPIVQTADYPINL
AAIKMQTKVIERITKESLHQLLPDIIPGLLQGYDNTESSVRKASVFCLVAIYSVIGEELK
PHLQLLTGSKMKLLNLYIKRAQTTNSNSSSSSDVSSHS
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcaatatggagtattgtctggcccaggtggtgcagaaagacctggggcggaag
gtgcaggtgggacaggagctcatagattacatcatggataaggacaagtcccaggacctg
gagcaagaccagacggctctggacaggatggtggacggcatcgctaccacctgggtcaac
tcctccaatttcaaggtggctttgctaggtatagaccttttatctgccttagtgacaagg
ttacaggaccgatttaggaaccatgtgggaacagtactggccagtctgatagatcgtctg
ggtgattccaaagaccaagtcagagaccaagatcaaatcctgctgctgaagatcatggag
caggctgcctccccacagtatgtttgggacagaatgctgggaggcttcaaacacaagaac
aacagaaccagagagggagcgtgcctttgtctcatctcaactctcaacatgtacggagcc
caaggcctaaccctcagtaaaatagtccctcacatatgtaatcttctaggagatcccacc
agtcaggtgagagacgcagctatgggctgcctggtggagatctacagacacgtgggggag
agggtgaggatggatcttagcaagaagggcctgccacagtcacggttgaatgtaatcttc
agccgatttgatgaagtccaaagatctgggaacatgatcccatcctcaggttcagataag
aactttgatgatgaggactctgtggacggaggccggtcctcctcctctgcatcgtcctcc
aaggcgccccccagtggtaggagggctgtagctgcagcttctgtccgcaggcccagctct
gccaccggacctggcaagatctctgctaaagatgctgctgcaggtgctgttgatgaggag
gacttcatcaaggcttttgaagaggttcctactatccagattcactccaacagagatatg
gaggacaatctctccaaggttcgggaggttttatctgacgacaaaaacgactgggagcac
agagtcgtcgccctgaagaaggtgcgttctctgctcgtggctggagccctggactatgat
agtttccctcagcagctccgtctgctggaggcccctctcaagctgtcagctaaagacctg
aggtcccaggtggtacgagaggcctgcatcacactgggatacctgtccacgttgctggga
aacaagtttgaccactgtgcagagaccctgatgcccacactgctcaacctggtgcccaac
agtgccaaggtgatggccacgtctggcatggcagccatacgtctcatcctcaggcataca
cactactcacgtctcatccccatcatcactagtaactgcacgtccaaatcagtggccgtc
cgaaggcgcagttatgagttcttagagctgttattactggagtggcagacacacacactg
gagaggcacgtggctgttctgactgaaaccatcaagaaagggatccatgatgctgactca
gaggccagatcggtcgcgagaaagtgttattggggtttccatggccactacagccgggag
gcggagcatctgttccaggccctggagtcaacctatcagaaggctctgcagtctcacctg
aagagttctgacagtgtcgtgtctctcccccaatcagaccgctcatcctcctcctcacag
gagagcctcaaccggcccctgtctgtcaagagtgccataggaggcagcatgacaaggggt
aagatggtgagttccagggtgaactccaactccggcggttcccttcagcgttcccgtagt
gatgtcgacgtgaacgccgcggccagcgccaagtcacgcctgatcaccgtgccctccgct
tctcccttcagctcagcagctgccctgcccccaggctcctatgcctcactagatggcaca
cccggtaaaattgatactggccgtgtgcgtacgaggagaacaagctccggcaatgctgtc
ggagccagcgctactgtgactgacagcagggggcgcagccgagccaaaatgatgtcccag
tcccagcgatccagatctgctaaccccactgggggtggtaaggcccggacttcatccaat
cagactggcagtcgctccagttcccctggcaagctgctgggccactcgtctgggtacggg
aggatcagcaggcccccctcagcctccagcacccctgcagacaagaggagcaaggtcccc
cgcagccagggctgcagtagagattcctctcccaacaggctgggcctagccaggctgtgt
ggtaaagctcttgttcctggtactcctctctcctcttacaacacgctagcaaggagccgt
atcccccggcccagcatgagtcagggctgcagcagggacacatctagggaaagcagccga
gacaccagccctgctcggggcttcaagcctcttgcctcccgacgtacctcccgctctacc
agcgccttatccacggctgacccccacagccagtcagaccgatttggtttgatccaccag
gcccgcatttctgcctcggtgaacgccatgagagtcctcaacactggcactgaggtggag
gctgctgtggctgacgcactgctattaggagactccagaaataagcggaagcctatgagg
cggcgctatgagtctcctggtatctactctgacgatgacgctaacagtgatgcgtccagc
gcctgctcggaacggtcgtacggctcccggaacggaggtatccctcactacctgcgtcag
acagaggatgtggcagaggtactcaaccactgtgccagctccaactggtctgagaggaag
gagggactgctgggactgcagaacctgctgaagagtcaaagaatactcagccgggtggag
ctgaagagactctgtgaaatcttcaccaggatgtttgcagatccacacagcaagagagtg
ttcagtatgtttctagagactctggtagactttatcctggtgcacagagaggacctgcag
gactggctgttcgtcctgctcacccagctactgaagaagatgggagctgacctgctgggg
tctgtccaggccaaggttcagaaggctctggacatcaccagggagtcttttccgtttgat
cagcagtttaacatcctgatgagattcattgtggatcagacacagacacccaacctcaag
gtgaaggtagccatcctgaagtacatagagtcactgggaagacagatggatcctacagac
tttgtcaactccagtgaaacgcgactggctgtatctcgcatcattacgtggaccacagaa
cccaagagctctgatgtcaggaagacccttcataactgggtggtggaggagctatcaggc
aggtccggtactgcagccttactggaggggcacctggaagagaggtgtaagcaggcggcc
caggtggtgctgatttctctgtttgagctgaacaccccggagttcaccatgctgctgggg
gccctgcccaagaccttccaggacggggccaccaagctgctccacaaccacctcaagaac
tccagcaacaccagcagcgtgagttctcccagcaacactattgggcggaccccaccccgc
cacacccccagccggaccagccccctcacctccccgaccaactgctcccatggtgggctg
tctccgagtcggttgtggggtgggtgttggagtggcgatgggctgtctaagcacccccct
ccccctcatcctcctccgcctccctccaccccctctggccccgccctcagggtcctccgc
agagcgtactctcccagtatgttggagtatgacacagagaacatgaactctgatgagata
tacagctccctgcgaggggtcacagaggccatccagagtttcagctatcgcagccaggag
gacctcaacgaaccaagagggaagagagacgatgctgtggggcgtgaaggtgtggcgtcc
tccccaggctcagatgcccgtttggggctggatgtggtggagggtgggcgtacggccttg
gataacaagacctccctcctcaacactccgtctccccgctccttctccgggccgcgggcc
agggagttcgccccctacggctatggggacaccatcacctcatcctacgacaagagtgcc
ctaaaggaggccgtgttcgacgatgacgtggaacagttcagagactgccgtcggcaggac
agcagtggtgagaacaagatggtgctgcctaagggctttgctccgggttcccaggaccac
tcagaccttgtggcagatcttctgaaggagctgtccaatcacaacgagcgtgtggatgag
cgtaagggggccttggtggagctgctgaagatcacacgagaggacagcctggccgtgtgg
gacgaacacttcaagaccatcctcctactgctcctggagacactgggggataaagaccac
accatccgggccctggctctgcgggtactgaaggagatcctgagaaaccaaccagcccgc
ttcaagaactatgctgaactcaccatcatgaagaccctggaggcacacaaagactctcac
aaggaggtggtgcgggcagcggaggaggctgcctccaccctagccggctccatccaccca
gagcagtgtatcaaggtgctgtgtcccatcgtccagacggctgactaccccatcaacctg
gctgccatcaagatgcagaccaaggtgatcgaacgcatcaccaaggagtccctccaccag
ctgctgcctgacatcataccaggactactgcagggctatgacaacacggagagtagtgtt
cgcaaggccagtgtgttctgtctggtggccatctactccgtgattggagaagagctcaaa
ccacacctgcagctactcacaggcagcaagatgaagctgctgaacttgtatatcaagagg
gcccagacgaccaacagcaacagcagcagttcctcggatgtgtcctcacacagctag
DBGET
integrated database retrieval system
