Oncorhynchus tshawytscha (Chinook salmon): 112238682
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Entry
112238682 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-18-like
KO
K16499
protocadherin delta 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112238682
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112238682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_4
PAG
Motif
Other DBs
NCBI-GeneID:
112238682
NCBI-ProteinID:
XP_042171974
LinkDB
All DBs
Position
Unknown
AA seq
1179 aa
AA seq
DB search
MEPGKIICVFYIRIWILLAVMALATQNVKGKTLKYQVYEEQKVGTVIARLKEDVADVLVK
LPSSVSLRFRAMQRGSTSFLSVREQDGEISIRSKIDREKLCEKNLNCSIEFDVLTLPTEH
LQLFHVEVEVLDINDNAPQFARAVIPIEISESAAVGARIPLDSASDPDVGENSLDTYSLE
PNNYFKIDIQSRTDGAKYSELVVLRELDREMQPGYELQLTASDKGVPPKSGSTLLRISVA
DSNDNSPIFEQSSYVIHLLENSPVGSLLIDLNATDADDGTNAKIVYSFSSHVSPKIVETF
KINSDNGHLTLMKRVDFESAASYDIDVQAQDMGPNSMPAHCKIFIKVVDVNDNKPDISIN
LMSQGDRGKEDAAYISEAAPLDSFVALVRVEDLDSGLNGEVVCKLHGQGSFKLQKTYENN
YMILTNVSLDREKRSEFSLTVIAEDRGTPSLSTIKHFTVHLLDENDNAPRFQKGRYEVFR
SENNAPGAYLTSLLATDPDLDANSQVSYFLVENTVHGSSISTFVTVDPSNGAVYALRTFD
REDVSRISFVVQAKDAGNPXLLSNATVVLTILDENDNPPVIVVPQLWNLTADVPVSKYTE
AGSLVTAVRATDRDTGVNAELTCSITAGNEEGFFSMDPRTCEISANVSLNMFPQEFAELT
VLVSDHGSLQQTTKAVLKIILYENMEGHVQVLDQGETPLDASLIIIMSLGAICTMLLVIM
VMFAARCNREKKDTRNSYNCRVAETNHQHHPKKPSRQIHKGDITLVPTVNGTLPIRAHHR
SPSATPPMDRAPMGSRQSHHSHQSLNSLVTISSNHIPESFALELAHATPPVEQVSQLLSM
LHQGQYQPRPCFRGNKYSRSYRYSLQDMDKFSLKDSGRGDSDAGDSDYDMGRESPIDRLL
GDGFSELYHLDILHRLHPAMRLCTEECRVLGHSDQCWMPPLALSLSSPASSSSDYRSNMF
IPGEESSNQPPHLLDDDQASIDSSERRKSFSTFGKEPGSSEEGVVSDGSSLLSEMNGIFQ
RLLPPSLDSYAECSENNVAAAATERGSGKGGHAKVLLPGGNNTKGPASYPAGVAAWAANT
HYLNPGGGAVGQSPSSHNTNNLTNMATSSTSSSSSNQPPHLRWLPAMEEIPENYEEDELE
MLGMGFLGGKQSRDRHHDMMDASELVTEINKLLLDARQT
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggaacctggaaaaataatctgcgtattttatatccgaatatggatacttctcgccgtt
atggcactggccacgcaaaacgtcaaaggtaaaacattaaaatatcaagtttacgaggaa
cagaaggtggggactgttattgcacggcttaaagaagacgtggctgatgttttggtcaaa
ctcccaagttctgtgtctttgcgcttccgagccatgcagagaggtagcacgtctttccta
tccgtgcgcgagcaggacggagagatcagcatccgttccaaaatagaccgagagaagctc
tgcgagaagaacctcaactgttccattgaattcgacgttctgactcttccaacagaacac
ttgcagctcttccacgtcgaggtggaagtgttggacattaatgataacgcgccccagttc
gcccgcgccgtaatccccatcgagatatccgagagcgcggcagttggggcgcgcattcca
ctggacagcgcgagtgaccccgacgtcggggagaactccctcgatacttactccctcgag
cccaacaactacttcaagattgacattcagagcagaacggacggggctaagtactcggag
ttggtggtgctaagggagctcgacagggagatgcagccaggttatgaacttcagctgacg
gcctccgataagggcgttccccctaaatccggttctactctcctcagaattagcgtggca
gattcaaacgacaacagtcctattttcgaacagtcttcatatgtgattcatctattggag
aattcacctgttggatctcttcttattgatctgaatgcgactgatgcagacgacggaacc
aacgccaaaatcgtctactcctttagcagtcatgtgtccccgaaaatcgtggaaacgttc
aagatcaactcggataatggccacctgacgctcatgaagcgcgtggactttgaaagcgcg
gcatcatatgacatcgatgtccaagcccaggatatgggccccaactccatgccagcacac
tgcaagatcttcatcaaggtagtggatgtaaacgacaacaaaccagacatcagcatcaat
ctgatgtcccaaggagacagaggcaaggaggacgcggcctatatctcagaggccgctcca
ttggattccttcgtggccttagtaagagtggaggacctagattccggtctgaacggagag
gttgtgtgtaaactccatggccaggggagttttaaactacagaagacgtacgagaacaac
tacatgatcctcactaacgtctcgctggatcgggagaagaggtcagagttcagcttgacg
gtcatcgccgaggaccgcggcacgcccagcctctcgaccatcaagcacttcaccgtgcac
ctgctggatgaaaacgacaacgctccacgcttccagaagggacgctatgaggtgttcaga
tcagagaacaatgcccctggggcctacctcacgtcgctattggcaaccgaccccgacctg
gacgccaacagccaggtgagctacttcctggtggagaacaccgttcacgggagctccatc
tccacctttgtcaccgtagacccgtccaacggcgctgtttacgccctccgcacgttcgac
cgcgaggacgtcagccggatatccttcgtagtccaggccaaggacgccgggaaccctncg
ttgctgagcaacgccaccgtcgtcctgacaatcctggacgaaaacgacaacccgccggtc
atcgtggttccgcagctctggaacctcacggccgacgtccccgtctccaagtacaccgag
gccggtagcctggttacggccgtcagggcgaccgaccgagacaccggcgtcaacgcagaa
ctcacatgttcaatcactgccggcaacgaggaaggcttcttctctatggatcctagaacg
tgcgagatcagcgccaacgtcagcctcaacatgtttccccaggagtttgcggagctcacc
gtcctggtcagtgaccacggttccttgcaacagaccaccaaggccgtcctgaaaatcatc
ctctatgagaacatggagggccacgtgcaggtgctggaccagggggagacgccgctcgac
gcctccctcatcatcatcatgtccctgggggccatctgcactatgctcctggtcatcatg
gtcatgttcgctgcccgctgcaaccgagaaaagaaagataccaggaactcgtacaactgc
agggtggcagagaccaaccaccagcatcacccgaagaaaccgtcgcggcagatccacaag
ggtgacatcacacttgttcccacggtgaatgggactctaccaatcagagcgcaccaccgc
tcaccctcggccacgccccccatggaccgggcgccaatgggaagccggcagagccaccac
agccaccagtcactgaatagcctggtgacgatatcgtccaatcatatcccggagagcttc
gccctggagttggcccacgctacgccacccgtcgagcaagtctcacagcttctgtccatg
ctccatcagggccagtaccagcctagaccctgtttccgtggcaacaaatactccagaagc
tacaggtactcattgcaggacatggacaagttcagcttgaaggacagtggtcgtggggac
agcgatgcgggggacagcgactatgatatgggacgagagtcccccatcgaccgtctgctg
ggggatggcttctctgagctctaccacctggacatactccacagactacacccagctatg
cgcctatgcactgaggagtgtcgtgtgttgggccattctgaccagtgctggatgcctccc
ctggccctctctctgtcctccccggcctcctcctcctctgactaccgtagcaacatgttt
atcccaggggaggagtcctctaaccagcccccccacctcctcgatgacgaccaggcttcc
atcgactcctcggagcgcaggaagagcttctccaccttcgggaaggagcccgggagttct
gaggagggagtggtcagtgatgggagttccttgctttcggagatgaacggaatcttccag
cgcctgctccctccgtcactggactcgtacgccgagtgcagcgaaaacaacgttgctgcc
gcggcaacggaaagaggaagtggaaagggtggccacgccaaggtgctgttaccgggcggc
aacaacaccaaaggcccagcctcctacccggcgggcgtggcggcgtgggcggctaacacc
cactatctgaaccccggaggcggagctgtcggccaaagcccatcaagtcataacaccaac
aacctcaccaacatggccacctcgtccacctcctcttcctcctccaaccagccaccacac
ctaagatggctgcctgccatggaggagatcccagaaaactatgaggaggatgagctggag
atgctagggatggggttcctgggggggaagcagagcagggacagacaccatgacatgatg
gatgctagtgagttggtcaccgagattaataaactactactggacgccaggcagacctag
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