Oncorhynchus tshawytscha (Chinook salmon): 112238703
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Entry
112238703 CDS
T05605
Symbol
trim25l
Name
(RefSeq) actin cytoskeleton-regulatory complex protein PAN1 isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
112238703 (trim25l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112238703 (trim25l)
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112238703 (trim25l)
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112238703 (trim25l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-B_box
zf-C3HC4_3
zf-RING_2
RING_XB3-XBAT31
zf-C3HC4_2
ANCHR-like_BBOX
zf-RING_5
MRP-S31
DUF948
BLOC1_2
zf-RING_6
CCDC22_CC
DUF4363
5_nucleotid
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
112238703
NCBI-ProteinID:
XP_042174083
LinkDB
All DBs
Position
Unknown
AA seq
663 aa
AA seq
DB search
MSGNLWTEEQFNCPVCLDLPNEPVTIPCGHSYCMGCIKDYWSKDNPRSPGVYSCPQCRQT
FCPKPSLSRNTMLAEAVEQLRKGALTTSARESIRSAHRANTMGRAKGGSRGGGVSRLPAM
AVPCDMCHGAGDQQAAVKSCLVCMASYCEAHLKPHQTKAELKKHELIAPTGKLAQKICTE
HKYLQEFYCRQCQMFVCWLCTSNQHKDHETTSTKAERTERQKELAEVQTENHQRLKEREG
ELKDMKKMLEATKRSADRVHDDTETVLSELQRSVERLQELVEGVMNQAGQEKVSEAQDVV
DKLEAEISELKRRDKDMKEVFRCEDNIHFLETCESLCSPFECNDLSCVVANPEATFEPVR
EAILNLRERVEDMCNVELGKITKTVNDTTLFTLGDKAKKNGVQKTGGFRSLFSGLGSKPT
TTNNNRPAAPTPTVSVAVRGPNSRGVGLHSQDVRSREEPRADRDRPRREEREPAREAAPR
PSTRSSPTQRRKKPAKNSPTQSRRETRRRSPSPTRSRREPASPSPTPSRREPASPSPTPS
RREPASPSPTPSRREPARPSPTPSRRETPRPEPTTTPTPGAVTQATPASGAFSRMGSIAS
LFRSHRRATPAPGPVSNNSGGVNPWGMGALTESQPEVNTSLFLDPPTPDPIMNQMPAFPA
LRR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtaatctgtggacggaggagcagttcaactgtcctgtgtgcctggacctcccc
aatgagccagtcaccatcccgtgtggccacagctactgcatgggctgcatcaaggactac
tggagcaaggacaaccctcgctcccctggagtctacagctgcccccagtgccgccagaca
ttttgtcccaagccctccttgtccaggaacaccatgctggcagaggccgtggagcagctc
cgcaagggggccctcaccacctccgccagggagtccatccggagcgcccaccgtgccaac
accatgggtagagccaagggaggttcccgtggtggtggtgtcagcaggctgccagccatg
gccgtgccctgtgacatgtgccacggcgctggagaccagcaggctgcagtgaagtcttgc
ctggtgtgtatggcgtcctactgcgaggcccacctgaaaccgcatcagacgaaagcggag
ttgaaaaagcatgagctgattgcgcccacgggcaagctggcgcagaagatctgtaccgag
cacaagtacctgcaggagttctactgtcgtcagtgccagatgtttgtgtgctggctgtgc
accagtaaccagcacaaggaccatgagaccacctccaccaaggcagagcgcacggagaga
cagaaagagctggctgaggtgcagacagagaatcatcagagactgaaagaaagagaagga
gagctgaaagacatgaagaagatgctggaggcaacaaagcgctcagcagacagggtacat
gatgacacagagacggtgctgtcggagctccagcgctcagtggagaggctccaggagctg
gtggagggtgtgatgaaccaggctgggcaggagaaagtaagcgaggcccaggacgtggtg
gacaagctggaggctgagatctcggagctgaagaggagagacaaggacatgaaggaggtg
ttccgctgtgaagacaacatccacttcctggagacctgtgagtctctgtgcagcccgttt
gagtgtaatgatctgtcgtgtgtggtggccaatccagaggctacgtttgagcctgtacgt
gaagccatcctgaacctacgggagagagtggaggacatgtgcaacgtggaactgggcaag
atcaccaagacagtgaatgacacaacactgttcaccttaggagacaaagcaaaaaaaaat
ggtgtccagaagacgggagggttcaggagtttgttttctggtctgggatccaaaccaaca
acaacaaacaacaaccgccctgcagctcccacaccgactgtctccgtggcggttcgaggt
cctaactcacgtggtgtaggcctgcactctcaggatgttaggagcagagaggaaccacga
gctgacagagacaggccgaggagagaggagagagaaccagccagagaggcagccccgaga
ccaagcaccagatctagtcccactcagaggcggaaaaagccagccaaaaatagccctacc
caaagtcgaagagagacgcgcagacgcagtcccagtcccactcgaagtcgtagagagcca
gccagtcccagtcccactccaagtcgtagagagccagccagtcccagccccactccaagt
cgtagagagccagccagtcccagccccactccaagtcgtagagagccagccagacccagc
cctacgcccagccggagagagacacccagaccagaacccaccaccacccctacccccggt
gctgttacccaagccaccccagcctcaggagctttcagccggatgggatccatagcaagt
ctcttccgctcccatcgacgtgccacaccggcacctgggccagtcagcaacaactctggt
ggagttaacccatgggggatgggtgcactgactgaatcccaaccggaagtgaataccagc
cttttcctggatccgccgacccctgaccccatcatgaatcagatgccagctttccctgca
ttgaggagatag
DBGET
integrated database retrieval system
