Oncorhynchus tshawytscha (Chinook salmon): 112238771
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Entry
112238771 CDS
T05605
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112238771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112238771
Enzymes [BR:
otw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112238771
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
112238771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
112238771
NCBI-ProteinID:
XP_042172412
LinkDB
All DBs
Position
Unknown
AA seq
698 aa
AA seq
DB search
MEVTRTNFKDSLSTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYMKLKKH
SMDFLLFQFGLCTFTYDQAESKYVIKTFNFYIFPKPFNRTSPDTKFICQSSSIDFLASQG
FDFNKVFRHGIPYLNQEEEVQLREQYEERRSQSNGSGNPSYISPNPNKGPGSVPEEHREY
IGRVVEKVESLFTTSEKTVDLEPCTGFQRKLIYQTLNSKFPKGLHVETLETEKKERYIQI
SKVDDEERKRRERQKQEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CVLPEDLNDFKEVTQCVFPRLLDTKLMATTQPFKELINITSLAELQKQLKESPFKSPKVV
TAEGFPSYDTAQEQLHEAGYDAFITGLCFISMANYLGTFLTPPRAHIPSQSKLIQPFVNK
LFLMRIIDIPYLNISGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYVQGRQQVRESQGHSTQSWDEDGWVKPHYT
SPSTVGAGPTGYSYGHNRPSLGKRCVSPIQEEQPTEGEAQRSHADGWSGYTHSHTHPDTG
SKKIRTDGVCVRTYAGVVDSKTSEGWLKTQSESDSSSMSPIQEEAGSEAGDDASDPATGE
WQQQPSTIQSKKSRKNNRMRKTDGAETTSSLFDVPQVW
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgaacaaatttcaaagacagtttaagcactgtgtacagcgcaatagag
gaagcagactttctcgcaatcgatggggaattttcaggtattagcgatgggcccaacgtc
agcgcactgactaacgggttggacacgccagaggagcgctacatgaagctaaaaaagcat
tccatggacttcttgctgtttcagtttggactgtgtacgttcacatatgaccaggcagag
tccaagtacgtcatcaagacttttaatttttatatattcccaaagccgttcaacagaacc
tccccagacaccaagttcatctgccagagttccagcatagacttcctggccagtcagggt
tttgacttcaacaaagtgttccgtcacgggatcccgtacctgaaccaggaagaggaagtg
cagctgcgggagcagtatgaggagaggcggagtcagagtaacggatcaggaaacccctcc
tacatctcccccaacccaaacaaaggccctggcagcgtccccgaggagcacagggagtac
atcggacgggtggtagagaaggtggaatctctgttcactacctcagagaagactgtggac
ctggagccctgcactgggtttcagaggaagctgatctaccagactctcaactccaagttc
ccaaagggccttcatgtggagaccttggagacagagaagaaagagcggtacatccagatc
agcaaggtggacgacgaggagaggaagaggagggagcggcagaaacaggagagagaacag
gaggagctgaatgacgctgtgggattctccagggtcatacacgccatctccaaatctgga
aagttggtggttggccacaacatgctgctggacgtcatgcacaccatccatcagttctac
tgcgtactgccagaggacctgaatgactttaaagaagttactcagtgtgtcttccccagg
ctgttggacaccaagctcatggccactacgcaaccgttcaaggagttgatcaacatcacg
tctctagcagagctgcagaaacagctgaaagagagccccttcaaatctcctaaagttgtg
acggcggaggggttccccagctacgatacagcccaggaacagctccacgaggcgggctac
gatgccttcatcactggtctctgcttcatctccatggccaactacctaggtactttcctg
actccccccagagcccacatcccatcccaatcgaaactcatccaacccttcgtcaacaaa
ctgttcctgatgaggatcatagatattccctacctcaacatcagcggaccagacctccag
cccaagagggatcatgttctgtacgtcaccttccctaaggagtggaagaccagtgacctc
taccagctgttcagtgcctttggtaacatccaggtgtcgtggattgatgacacgtcagcg
tttgtatctctgagtcagacggaccaggtacagatcgcgatgaacaccagtcgctatgcg
gagagctaccgtatccagacgtatgcagagtatgtccagggcaggcagcaggtcagggag
agccagggccattctacccagtcctgggacgaggacggctgggttaaaccgcactacacc
tccccctctacagttggtgctggtcctactggctacagctacggtcacaacaggccgtcg
ttggggaaacgctgcgtcagtccgatccaggaggagcagcctacggagggagaggctcag
agatcacacgctgacggatggagtggctacacgcactctcacacacaccccgacacgggc
agcaagaagatcaggaccgacggggtgtgtgtacggacgtatgcaggagtagtggacagt
aagacgtcagaaggctggctgaaaactcagtctgagtctgattcgtcgagcatgagtccg
atccaggaagaggcggggtcggaggcgggagacgacgctagtgatccggcgacgggcgaa
tggcaacagcagccttcaaccattcagagcaagaagagccgcaagaacaacaggatgagg
aagactgatggtgcagagacgacgtcttctctgttcgacgtacctcaggtctggtag
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