Oncorhynchus tshawytscha (Chinook salmon): 112238954
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Entry
112238954 CDS
T05605
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
otw03083
Polycomb repressive complex
otw04110
Cell cycle
otw04330
Notch signaling pathway
otw04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112238954
03083 Polycomb repressive complex
112238954
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
112238954
04350 TGF-beta signaling pathway
112238954
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112238954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112238954
Enzymes [BR:
otw01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
112238954
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
112238954
HDAC complexes
Sin3A-HDAC complex
112238954
BRAF-HDAC complex
112238954
REST complex
112238954
SHIP complex
112238954
MiDAC complex
112238954
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
112238954
Heterochromatin formation proteins
Other heterochromatin formation proteins
112238954
Chromatin remodeling factors
NuRD complex
112238954
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
112238954
NCBI-ProteinID:
XP_042169488
UniProt:
A0AAZ3QWC6
LinkDB
All DBs
Position
Unknown
AA seq
485 aa
AA seq
DB search
MALSSAGGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ASGEEMTKYHSDDYIKFLRSIRPDNMSEHSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV
AGAVKLNRQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFFTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE
AIFKPVMAKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDSIIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDY
LEKIKQRLFENLRMLPHAPGVQIQAIPEDAPHPDSGDEEDEDPDKRISIRAHDKRIACEE
EFSDSEDEGQGGGGRRNAANHKKTKRVKTEEEKEETEEKKEVKDEDKDAEEKMDTTGPKE
EAKTC
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtcgtctgcaggaggaacaaagaagaaagtttgctattattatgacggtgac
gtgggtaattattactatggtcagggtcatcccatgaagccccacaggatccgtatgacc
cacaacctgctgctcaactatggactgtacaggaagatggagatctatagaccccacaag
gccagtggagaggagatgaccaagtaccacagtgacgactacatcaagtttctgcgttcc
atccggccagacaacatgtcagagcacagcaaacagatgcagagatttaatgtgggagag
gactgcccagtgtttgacggcctatttgagttctgtcagctctcaacgggaggctctgtc
gcgggggcagtgaagctgaacaggcagcagacggacatcgccatcaactgggccggagga
ctccatcatgccaagaagtctgaggcctcggggttctgctacgtcaacgacatagtcctc
gccatcctggagctgctcaagtaccaccagagggtgttgtacatagacatcgacattcac
catggagacggagtggaagaggctttcttcaccacagaccgggtcatgacggtgtccttc
cacaaatatggagaatacttccctggcaccggagacctgagggacattggagcagggaag
gggaagtactacgctgtaaactaccctctcagagacggcatcgacgatgagtcttacgaa
gccatcttcaaacctgtgatggctaaagtgatggagatgttccagcccagtgcagtcgtg
ttacagtgtggagccgactctctctcaggagacagactgggctgtttcaacctcaccatc
aaaggtcatgctaagtgtgttgagtacatgaagagtttcaacctgcctctgttgatgttg
ggaggtggaggttataccatccgtaatgtggcccgctgctggacctacgagaccgctgtg
gctctggacagcattatacctaacgagctgccatacaacgactactttgagtactttggt
cctgacttcaagctccacatcagcccgtctaacatgaccaaccagaacaccaatgattac
ctggagaagatcaaacagaggttgtttgagaacctgcgtatgctgccccacgctccgggg
gtccagatacaggccatcccagaagacgctccacacccggactctggagatgaggaggac
gaggaccctgacaaacgcatctccatcagggcccatgataagaggatagcctgtgaagag
gagttctctgactctgaggatgagggacagggaggagggggaaggaggaacgctgccaac
cataagaagaccaaacgagtcaagactgaggaggagaaagaggagactgaagagaagaaa
gaagtgaaagacgaggataaagacgctgaagagaagatggacacaacagggccaaaagaa
gaagctaagacatgttga
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integrated database retrieval system
