Oncorhynchus tshawytscha (Chinook salmon): 112238998
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Entry
112238998 CDS
T05605
Name
(RefSeq) sorting nexin-27 isoform X1
KO
K17936
sorting nexin-27
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112238998
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112238998
Membrane trafficking [BR:
otw04131
]
Protein recycling
Others
Others
112238998
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
112238998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
RA
PDZ_6
SNX17-27-31_F1_FERM
PDZ_2
VirE3
SNX17-31_F2_FERM
SNX17_FERM_C
USP7_C2
Motif
Other DBs
NCBI-GeneID:
112238998
NCBI-ProteinID:
XP_042163399
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Position
LG03:3445159..3483764
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AA seq
570 aa
AA seq
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MADVEGEGINSVTPPLVQPSSPNGSGASPTQGTGSCQTVTTVTSGPRLVRIVKSDSGYGF
NVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGISKGDRILEVNSVNVEGATHK
QVVDLIRAGERELMLAVLSVPPQEADCLDPGDDGSAQSCYDYSDKQAVPISVPTYKHAEL
NQERFVVYNVYMAGRQLCSKRYREFAILNQNLKREFANYTFPKIPGKWPFSLSEQQLDAR
RRGLEEYLEKVCSVRVIGESDVMQEFLSDESDENYNGVSDVELRIAMPDKTTVTVRVRKN
CTTDQVYQAVVMTVGMDSITASYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTC
LTLRKWLFTTEEEILLNDNQLAVSYCFHQAVDDVKRGFIKAEEKSYQLQKLAEQKKMAMY
LSMLRGSEGYNEIIFPHCSCDSRRKGHVVTAISIHHFKLHACTEEGTLENQVIVFEWVEM
QHWDTDEEGMAFCFQYARAEKKPRWVKIFTPYFNYLHECVERVFCELKWRKEVEEEAVDK
DNKNCSKEEYLPAVETQKGWRHLGGEIITS
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgtcgagggagagggaattaattcggtgacacctcctttagttcagccatcc
tctcctaacggctccggtgccagcccaacgcagggcaccggcagttgccaaacggtgact
accgttacgtcaggcccgcgactggtgcggatagtcaagtctgactcgggatatggcttc
aatgtccggggacaggttagcgaaggaggacaactacggagcatcaacggggaattgtat
gccccgctacagcatgttagtgctgttttaccgggaggtgcagcggacagagccggtatc
tcgaaaggggaccggattctggaagttaatagtgtgaacgtggagggggcgacccataag
caggtggtggatctgatccgtgcgggggagagggagctgatgctggccgtgctgtctgta
cctccccaggaggctgactgtctggaccctggagacgacggctcagcccagtcctgctac
gactacagcgacaaacaggccgtccccatctccgttcccacatacaaacacgctgaactc
aaccaggagaggtttgtggtgtataatgtgtacatggcaggcagacagctgtgctctaag
aggtacagggagtttgctatcctcaaccagaacctgaagagagagtttgccaactacacc
ttccccaaaatacctggcaaatggcctttttccctgtctgaacaacaactagatgctaga
cgcaggggactggaggaatacctggagaaagtgtgttcagtgagggtgattggggagagt
gatgtcatgcaggagtttctgtctgacgagtctgatgagaactataacggcgtatcagat
gtggagttgaggatagccatgcctgataaaaccaccgtcacagtccgagtccgcaagaac
tgtacaactgaccaggtctaccaggctgtggtcatgacagtaggaatggacagcataacg
gccagctactttgctctgtttgaggtcatcaaccactcctttgtgcgtaaactggctcct
aatgagttcccccacaagctgtatgttcagaactacacgtctgctgtccctgggacctgc
ctcaccctgcgcaagtggcttttcaccaccgaggaggagatcctgctcaatgacaaccaa
ctggccgtcagctactgcttccaccaggcggtggatgatgtgaaaaggggatttatcaag
gcagaggagaagtcctaccagctacagaaattagcagaacagaagaagatggccatgtat
ctcagtatgttacggggcagtgaaggctacaatgagatcatcttcccacactgctcctgt
gactcccgacgcaaaggccacgtcgtcacagccatcagcatacaccactttaaactgcac
gcctgcacagaggagggaacgctagagaaccaggtgatcgtgtttgagtgggtggagatg
cagcactgggacactgatgaggagggcatggccttctgcttccagtacgccagggcagag
aagaaacctcgctgggttaagatctttactccctacttcaactacctgcatgagtgcgtt
gagagagtcttctgtgaactcaagtggaggaaagaggtggaagaggaggctgtggataag
gacaataagaactgcagtaaagaagaatatcttccagctgttgagacacagaagggatgg
aggcacctaggaggagagatcatcacctcctaa
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