Oncorhynchus tshawytscha (Chinook salmon): 112239110
Help
Entry
112239110 CDS
T05605
Symbol
yars1
Name
(RefSeq) tyrosine--tRNA ligase, cytoplasmic isoform X1
KO
K01866
tyrosyl-tRNA synthetase [EC:
6.1.1.1
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
112239110 (yars1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
otw01007
]
112239110 (yars1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
otw03016
]
112239110 (yars1)
03029 Mitochondrial biogenesis [BR:
otw03029
]
112239110 (yars1)
Enzymes [BR:
otw01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.1 tyrosine---tRNA ligase
112239110 (yars1)
Amino acid related enzymes [BR:
otw01007
]
Aminoacyl-tRNA synthetase
Class I (A)
112239110 (yars1)
Transfer RNA biogenesis [BR:
otw03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
112239110 (yars1)
Prokaryotic type
112239110 (yars1)
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
112239110 (yars1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1b
tRNA_bind
Motif
Other DBs
NCBI-GeneID:
112239110
NCBI-ProteinID:
XP_042151014
LinkDB
All DBs
Position
LG13:complement(5548023..5560710)
Genome browser
AA seq
528 aa
AA seq
DB search
MGEQLSPDEKLHLITRNLQEVLGEEKIKQVLSERELKVYWGTATTGKPHVAYFVPMSKIA
DFLKAGCEVTILFADLHAFLDNMKAPWELLELRVQYYEQVIKAMLESIGVPLDKLKFIKG
TDFQLSREYTLDVYRLSSMVTEHDAKKAGAEVVKQVDHPLLSGLLYPGLQALDEEYLKVD
AQFGGVDQRKIFTLAEKYLPSLGYAKRSHLMNPMVPGLTGAKMSSSEEESKIDLLDRKED
VKKKLKKAFCEPGNIENNGVLSFVKHVLFPLVGEFSIKRDPKFGGDKTYTDFEEVEKEFG
EELIHPGDLKAGVEVALNKLLDPIRKKFESPELRKLSSTAYPDPSKNKGAGKGNPKVAEE
DELVPSRLDIRVGKVISVEKHPDADSLYLEKIDVGEAEPRTVVSGLVAYVSQEALQDRLV
LLLCNLKPQKMRGVESQAMLLCASIEGDPRRVEPLDPPEGSSPGERVFVEGYETGKPDDK
LNPKKKLWEKLQVDLKVSGQCVAQWQDKHLMTKLGHITCKTLKGGNIS
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgggagaacagctgagcccagatgagaagcttcacctcatcactaggaaccttcaggag
gtgcttggagaagagaagataaagcaggtcctgtcagagagggaactgaaggtgtactgg
ggaactgccaccacaggaaaaccccatgttgcctacttcgtccccatgtccaagattgcg
gacttcctcaaggcagggtgtgaggtgaccatcctgtttgcagacctgcacgcgttcctg
gacaacatgaaggctccctgggagctgctggagctgagggtccagtactacgagcaggtg
atcaaggccatgttggagagtatcggggtgccgttggacaaactcaagttcatcaaaggg
acagacttccaactcagcagagagtacactctggacgtgtatcgtctgtcgtccatggta
acggaacatgatgctaagaaggctggagccgaggtggttaaacaggtggaccaccctcta
ctcagtggtctgctctacccgggactacaggctctggatgaggagtatctgaaagttgat
gcccagtttgggggagtcgatcagaggaagatcttcaccctggctgagaagtacctgccc
tctctgggctatgctaagcggtcccatctgatgaaccccatggtaccaggactgactgga
gctaagatgagttcttcagaggaggagtctaagattgacctcctggacaggaaggaagat
gtgaagaagaagctgaagaaggctttctgtgagccgggcaacattgagaacaacggagtc
ctctcatttgttaaacatgtcctcttcccactcgtaggagagttctccatcaaaagagac
cccaagttcggaggagacaaaacctacacagactttgaggaagtggagaaagaatttggc
gaagagctgatccatccaggtgacctgaaggcgggcgtggaggtggcccttaacaagctg
ctcgacccaatcaggaagaagtttgagtctccagagcttcgtaaactctccagcacggcc
tatccagacccgtcaaagaacaagggagcagggaaggggaaccctaaagtagcagaagag
gatgagctggttccctccagactggacatcagggtgggcaaggtcatcagtgtggagaag
catccagatgctgattcgctgtacctggagaagatagacgtcggagaggcggagccaagg
acggtggtgagcggcctggtggcctacgtttcccaggaggccttgcaggacaggctggtg
ttgttgctatgcaacctgaagccccagaagatgaggggggtagagtcccaagccatgctg
ctctgtgcctccattgagggggatcccagaagagtggagcctcttgacccccctgagggg
tcgtcacccggggaacgggtgttcgttgaggggtacgagacgggcaagccagacgacaaa
ctaaacccaaagaaaaagctgtgggagaaactacaggtggacctgaaggtgtcaggacag
tgtgtagcccagtggcaggacaaacacctgatgaccaaactgggacacatcacctgtaaa
acactgaagggaggcaacatcagctaa
DBGET
integrated database retrieval system