Oncorhynchus tshawytscha (Chinook salmon): 112239271
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Entry
112239271 CDS
T05605
Symbol
snx18a
Name
(RefSeq) sorting nexin-18a
KO
K17923
sorting nexin-9/18/33
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112239271 (snx18a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112239271 (snx18a)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112239271 (snx18a)
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
112239271 (snx18a)
Macropinocytosis
Sorting nexins
112239271 (snx18a)
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
112239271 (snx18a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAR_3_WASP_bdg
PX
SH3_9
SH3_2
SH3_1
XFP
Vps5
SH3_10
HBM
Motif
Other DBs
NCBI-GeneID:
112239271
NCBI-ProteinID:
XP_042187163
LinkDB
All DBs
Position
LG12:5333722..5361693
Genome browser
AA seq
587 aa
AA seq
DB search
MALKARALYDFNSENPGEISVKENEIVTLYSEQDIEGWLEGSNSKGERGLFPASYVEILK
NDTASTFNNNSTSGSRYANIPTGGFGDASSYNIQNHTDNLSKTSVTSPGLTALSPPAPAQ
QQPIYQASQGSDEDWDDDWDDSSTVADEPGVVGVNYQRDFDGNGPSTYRLSTSMSKGSNV
QQAKSSATVSRNLNRFSTFVKSGGEAFVLGEAAGFVKDGDKICVVTGQYGPEWQENPYPF
ACTIDDPTKQTKFKGMKSYIAYKLTPTHTQTQVNRRYKHFDWLYARLVEKFPVISVPHIP
EKQATGRFEEDFISKRRKGLIWWMSHMTSHPVLSKCDVFQHFLTCNSTDEKSWKQGKRKA
EKDEMVGANFFLTISTPSGPPLDLVEVESKIDGFKAFTKKMDDSVVQVNATTNEFARKQI
TGFKKEYQKVGQAFKVLGQAFELDQQAYSVGLNQAIAYTGEAYDAIGDYFAEQPRQDVDP
LMDLLQLYQGHLANYPDIIHVQKGALTKVKESQKHVEEGKMDAPQADGVNERCNIISFAT
LAEIQHFHQVRVRDFKAQMQQYLTEQIGFFQKITGKLEEALQKYDNA
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcaaggcgagggctttatacgacttcaattccgaaaaccccggggagatatca
gtgaaagaaaatgaaatagtgactctgtacagcgaacaggacattgaaggctggctagaa
ggatccaacagcaaaggcgagagaggtctcttccccgcgtcctacgttgagatcctgaag
aacgacaccgcgtccacgtttaacaacaacagcacatctggatcccgatacgccaatatt
ccaaccggaggtttcggggatgcctcctcttataacatccagaatcatacggacaacttg
tccaaaacatcagtaacatcgcccgggcttacagcgttgtcaccgcctgccccagcacag
cagcaacccatttatcaagccagccagggcagcgacgaagactgggatgatgactgggat
gacagctcgacagtggcggatgaacccggggttgttggggttaattaccaaagggacttt
gatggcaatggaccgtctacatacagattgtcaacatcaatgtctaaaggtagcaacgtt
caacaagccaagagctctgctacggtcagtagaaacctcaataggttttcaacatttgtg
aaatcaggaggggaagcgttcgtgttaggtgaggcagctgggtttgtgaaagatggggat
aagatctgtgttgtaacgggacaatacggtccagaatggcaggaaaacccataccccttc
gcctgtaccatagacgaccccaccaagcagaccaagttcaaagggatgaagagttacatt
gcctacaagctgacgcccacccacacacagacccaggtcaacaggagatataaacacttt
gactggctctacgccaggctggtggagaagttccctgtcatctcggtgcctcacatccca
gagaaacaggccacggggcggtttgaggaggacttcatctctaaaaggaggaaagggttg
atatggtggatgagtcacatgaccagccacccggtcctgtccaagtgtgatgtctttcag
cacttcctcacctgcaacagcacagacgagaagtcatggaagcaggggaagaggaaggcg
gagaaggacgagatggtgggggctaacttcttcctcactatctccacgccctccggaccc
cccctggacctggtcgaggtcgagtccaagatcgacggcttcaaagctttcaccaagaaa
atggacgacagcgtggtccaagtcaacgccaccaccaacgagtttgcccggaaacagatc
acggggtttaagaaggagtaccagaaagtgggccaggcgtttaaagtcctgggacaggcg
tttgagctggaccagcaggcgtattcagtagggttgaaccaggccatagcgtatacagga
gaggcatacgatgctatcggagactactttgcagagcagccaagacaagatgtggatcct
ttaatggatttgttacagctgtaccagggacatctggccaactaccctgacatcatccac
gtacagaaaggagcacttaccaaggtgaaggagtcccagaagcacgttgaggaaggcaag
atggacgctccccaggcggacggcgtcaacgagcgctgtaacatcatctccttcgccacg
ctggcagagatccagcacttccatcaggtccgggtgagggacttcaaggcccagatgcag
cagtatctaaccgagcagattggcttcttccagaagatcaccggaaagctggaggaggcc
ctacagaagtatgacaacgcttag
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