Oncorhynchus tshawytscha (Chinook salmon): 112239306
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Entry
112239306 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase RNF43 isoform X1
KO
K15694
E3 ubiquitin-protein ligase RNF43 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
112239306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112239306
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112239306
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112239306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZNRF_3_ecto
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
FANCL_C
Motif
Other DBs
NCBI-GeneID:
112239306
NCBI-ProteinID:
XP_042165121
LinkDB
All DBs
Position
LG30:46047121..46306036
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AA seq
935 aa
AA seq
DB search
MFIEILPVVEDYKSRRVPGLNRSVYDNFNKHVENEDRTAVYLIRGPALGHIFLVLNQHWW
LPAFEVHDVHPEPAATADPMIVLQRRLAGLWPWLLMAALQVVFGQTGLELAAAVETERSA
LRAVIKVTLLRPEPTGKPITLEGLFVGGSAGSAEGKLMQSHPLSLCNTSEDERQESDFIS
IVKLESPERKVPQCLPLLHKARLALERGAQAVIFDVTDDVNAKFQLHESDSLLRPVVLMQ
AEDAETLMELVNRNEEASVRIDIKREDPKWAHYDVVVLLTIVLAILAIVSIFAFRYRCKS
SRTWDSVHQQTMRAISRLETRMYSSQGCGGSQRPRGGWGSNSSSNSSPVCAICLEEFLEG
QDLRIISCAHEFHKECVDPWLLQHRTCPLCMHNIMGSELSGQPRRTRLQQTPEHSQGFLH
THPIPFSMRPHYPRGPSGPYPSLGHYSGSPPLDPQTHRFLPSRPLGPGCGYLHPAEGPGR
PHRAGGSCKTAGHPMETHYGPGPRRSCHAYRSGCPSQRSASSSRLHHAPSSAPRASAGGA
HSRGNEGGSCSGGSYRTEHSGYLADGPASDSSSGPCHGSSSDSVLNCTDVSLQAVYGSWS
TFRSSLSSDYDPFVYYGPGPGPTGRRDSMEAGAQRPRSLDSVVNRDRGRGGGGRRGGCSE
EQQQAVFSHVHYHRHRHHHYREEGEREHGQGQGPGRGSDEELGATAFGRESGSLPALDKD
SPVCPLKDSPCHCPKADHTDSRGAHGHGTEGQGHELSHPSGPPPVLVTPAPLPPPPTCCH
QDHSHGGHPHRRAGLLGDCVLDSPSVRFQQNLDLQDDCSIHIHYDQGYCCPPPDLPPALL
SMPVPLILDSGGMRPLGGLEDWPCCGGPHHVVWQKRVQQAHSEPQLLGVPMDITPPPSSR
RHHGPHSPADDRNTDLCLYCQTLHNNQGSEEESGV
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgtttattgaaatcttgccagtggttgaagattacaagagccgccgtgtgcccggactg
aaccgatctgtctatgataactttaacaagcacgttgaaaacgaggaccggaccgctgtt
tatctcatcagaggaccagcgctgggccatatatttcttgtcctgaatcaacattggtgg
ttaccagcttttgaagtccacgatgtacacccggagcccgccgctacagccgatccaatg
atcgttctccagcggcgactggccgggctctggccgtggctgctcatggcggccctgcag
gtggtgtttggccagacgggcctggagctggcggcggccgtcgagacggagcgctcggcc
ctcagggctgtcatcaaggtgacactgctgagacccgagccaacggggaaacccatcact
ctggaagggctgtttgtcggagggagcgccggctctgcagaggggaagctcatgcagtcc
caccctctgtccctgtgcaacaccagtgaagatgagcgccaggagtcagacttcatcagc
atcgtcaagctggagagcccggagcgcaaggtgcctcagtgtctgcccctgctccacaag
gcacgcctggcgctggagagaggggctcaggctgtcatctttgatgtcaccgatgatgtc
aacgctaagttccagctgcatgagtcagattccctgctgcgtccggtggtgctgatgcag
gctgaggatgctgagacactgatggaactggtcaacaggaacgaggaggccagcgtccgc
atcgacatcaagagggaggaccccaaatgggcccactatgatgttgttgtcctgctcact
atagtccttgctattctggccatcgtttcgatctttgctttccggtatcgatgcaagtcc
agcagaacctgggactcagtccaccagcagacgatgcgagccatcagtcgtctggagacg
cggatgtacagctctcagggctgcgggggctcacagcgcccccgtggaggctgggggtct
aatagcagctctaactccagccccgtctgtgccatctgtctggaggagttcctggaggga
caggacctgaggatcatctcgtgtgctcatgagttccacaaggagtgtgtggacccctgg
ctactgcagcaccgcacctgtcccctctgcatgcacaacatcatgggttcagagctgtct
ggacagccacggaggaccagactacagcagacccctgagcacagccagggtttcctccac
acccaccccatccccttctccatgaggcctcactacccccgcggtccctctggtccatac
ccctccctgggccactatagcggctccccgcctctggacccccagactcaccgcttcctc
cctagccggcccctgggccctggttgcggatacctccaccctgcagagggccccggaagg
ccccacagagccgggggcagctgcaagacagcaggccaccctatggagacccactacggc
cccgggccccgccgctcctgccacgcctaccgctccggctgcccttcccagcgcagcgcc
tccagttccaggctccaccacgccccctcctctgctccccgcgcctccgcagggggagcc
cacagccgggggaacgaggggggcagctgctctggggggagctaccggacggagcacagt
ggctacctggctgatggaccggccagtgactccagctctggcccctgtcacggctcctcc
agtgactcggtcctcaactgtactgacgtgtccctgcaggctgtgtatggtagctggtcc
acgttccgcagctccctgagcagtgactatgatccgtttgtgtactacgggccgggaccg
ggaccgacaggccgcagggacagcatggaggcaggggcccagagacccaggtccctggat
tcagtggtgaacagagacagaggacgaggaggaggaggaagaagaggagggtgctctgag
gaacagcagcaggctgtgtttagccacgtccactaccaccgccaccgtcaccaccactac
cgagaggaaggggagagggagcacggccagggccaggggccaggcagggggtcggacgag
gagctgggggctactgcttttggccgtgagtcaggatctctcccggctctggacaaagat
tccccagtgtgtcctctgaaagacagcccctgtcactgccctaaggcagaccacacagac
agtaggggggcccatggccacgggacagagggtcagggccatgagctcagccacccctca
ggcccccctccagtcctggtaaccccagcccccttaccacccccacccacctgctgtcac
caggaccacagccacgggggccacccccaccggagggcaggcctgctgggcgactgtgtg
ctcgacagcccctcagtgcgtttccaacagaacctggacctgcaggacgactgtagcatc
cacatccactatgaccagggttactgctgcccccctcccgacctgccccccgctctgctc
tccatgcctgtgcccctcatcctggactctggaggaatgaggcccctggggggcctagag
gactggccctgctgtggagggccccaccatgtggtgtggcagaagcgggtgcagcaggcc
cactctgagccccagctgctgggggtccctatggacataaccccacccccatccagcagg
cgccaccacggtccccacagcccagcggacgaccgcaacacagacttatgtttatactgc
caaacattacacaacaatcagggatccgaggaggagtccggcgtgtga
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