Oncorhynchus tshawytscha (Chinook salmon): 112239481
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Entry
112239481 CDS
T05605
Name
(RefSeq) thrombospondin-2-like isoform X1
KO
K04659
thrombospondin 2/3/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112239481
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112239481
09144 Cellular community - eukaryotes
04510 Focal adhesion
112239481
09142 Cell motility
04820 Cytoskeleton in muscle cells
112239481
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112239481
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112239481
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112239481
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112239481
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112239481
Exosomal proteins of colorectal cancer cells
112239481
Exosomal proteins of bladder cancer cells
112239481
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112239481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_ADAMTS
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
112239481
NCBI-ProteinID:
XP_042153599
LinkDB
All DBs
Position
LG14:52996753..53048846
Genome browser
AA seq
935 aa
AA seq
DB search
MTPLIAWLMVFLCDLTAGVERPEVMCRRSCEELNDLLSELHGLHIVTTSLLHDLQRATEE
NEALREALSELGSSLDREGGGEDDEEERVCVQDGRVYQREEDWVSDSCTFCTCQEGKAVC
RQVTCPPVICSSPSFTEGECCPVCLGLGSEDGWSPWSEWTECSVTCGRGFQRRGRSCDDV
STSCSDSSLQTRRCTLGSCESRVHGNSGWGLWSPWSACSVSCGSGLVVRVRLCNFPLAQR
GGSGCRGNTTETHPCDATPCPIVGVWGPWSSWLPCSVSCGSGLMIRQRECSNPAPRHGGR
NCVGETADYAACNTQPCPIDSCLSRPCFPGVSCHSETDGSWECGTCPLGYHGNGSVCEDQ
DECVLQGVCVTECVNTDPGFHCHPCPPRYHGNQPYGLGLEDANNTKQVCEPHNPCKDNTH
CCSQHAECVYLGVASETVYRCVCGVGFAGDGFLCTEDSDLDGWPNHILPCHHNTTYHCLQ
DNCPALPNSGQEDLDNDRLGDACDPDDDNDDVLDERDNCPGHYNPHQFDSDRDGVGDRCD
NCPFTPNPLQTDTDSNGEGDACSIDMDGDEMLNEHDNCPLLYNTEQRDTDLDGVGDQCDN
CPFVHNPTQTDSDSDLVGDHCDDNEDIDEDGHQNSLDNCRYVANSNQVDHDRDGIGDACD
HDDDNDGIPDDRDNCRLVPNADQIDADNDGRGDACKDDFDNDSIPDALDVCSENSGIGVT
DFRKFQTVLLDPQGTTQSDPLWVVRGHGTELLQTANSDPGIALGFDEFRAVDFSGTFYVN
TDRDDDYVGFVFSFQSSRRFYVVMWKQVSQAYWEKSPSRAFGNAGVSLKVVNSSSGPGEA
LRNALWHTGNTIQQVRTLWHDPNNTGWKDYTAYRWHLIHRPKTGFIRIVVSEGRSILADS
GPVYDRTLAGGRLGLFVFSQEHILFSDLRYTCRDN
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgacaccactgattgcctggctgatggtgtttctctgtgatctgacagcaggggtggag
cgtcctgaggtgatgtgtcgtcggtcctgtgaggagctgaatgatctgttatcagagctg
catggcctccacatcgttaccactagtctgctgcacgaccttcagagagctacagaggag
aatgaggcattgcgtgaagctctctctgagctgggcagcagtttggacagagagggagga
ggagaagatgatgaagaggagagagtgtgtgtgcaggacggacgtgtgtatcagcgggag
gaggactgggtttcagacagctgcacattctgtacctgccaggaggggaaggcagtgtgt
cggcaggtcacctgtcctccagtaatatgttccagtccttccttcactgaaggggaatgc
tgccctgtgtgtctggggttgggaagtgaagatggatggtccccatggtcggagtggacg
gaatgttcggtcacctgtgggcgtggcttccagcggagagggcgatcttgtgatgatgtc
tccacgtcctgttctgactcctccctccaaacccgcaggtgcaccctgggaagttgtgaa
agccgagtccatgggaacagcggctggggcctgtggtctccgtggtctgcatgttctgtg
tcgtgtggttcaggtctcgttgtgcgtgttcgactctgcaacttccccctcgctcagcgc
gggggcagcggctgccgtggcaacactacagagacacatccctgtgacgctacaccctgt
ccaattgtcggggtctggggaccgtggtcttcctggttaccatgcagtgtgtcgtgtggc
agtgggctgatgattcgtcagcgggagtgttctaaccccgccccccggcatggaggcagg
aactgtgtgggagagacggccgactacgcagcctgcaatacacaaccctgtccaatagac
agctgtctttctaggccctgcttccctggggtctcctgccactctgagactgatggctca
tgggaatgtgggacctgtccactgggttaccatggaaatggctctgtctgtgaagaccag
gatgaatgtgtgttgcagggtgtgtgtgtgaccgagtgtgtgaacacagacccagggttc
cactgtcacccctgccccccccgatatcacggcaaccaaccctacggtctcggactggaa
gatgccaacaacaccaaacaggtctgtgagccccacaacccctgtaaagataatacacac
tgttgcagtcagcatgcggagtgtgtgtacctgggcgtggcgtctgaaactgtgtatcgg
tgtgtgtgtggcgttggcttcgctggggacggcttcctgtgtactgaagattctgaccta
gatggctggcccaatcatatccttccctgccaccacaacacaacctaccactgtctacag
gataactgccccgccctgccaaactccggacaggaagaccttgacaatgatcgccttgga
gatgcctgtgaccctgatgacgacaacgacgatgtcttagatgagagggataactgccct
ggacactacaacccccatcagtttgactctgacagagatggagttggagaccgctgtgat
aactgtcccttcacccccaaccctttacagactgatacagacagcaacggagagggagac
gcctgcagtatcgacatggatggagacgagatgctgaacgagcatgataactgtcccctg
ctgtataacactgagcagagagatacagacctggacggagtgggggaccaatgtgacaac
tgtcctttcgtgcacaaccctacacagactgattcagacagtgatctggttggtgatcac
tgtgatgataatgaggatatagatgaggatggtcatcagaactccctcgacaactgtcgc
tacgttgccaatagcaaccaggttgaccatgacagagatggcattggcgacgcctgcgac
catgatgatgacaacgatggtatccctgatgaccgtgacaactgccgacttgtgccgaac
gctgaccaaatagacgcagacaatgatggtcgtggtgatgcttgtaaggatgactttgat
aatgacagtataccagatgcactagatgtttgctcagagaacagtggtattggagttaca
gacttcaggaagtttcagacggttctgttggaccctcaggggaccactcagtctgaccct
ctgtgggtggtccgaggacacggaaccgaactgctacagactgcaaactctgaccctggc
atcgccttgggttttgatgagttccgtgcggtagacttcagtgggacattctacgtgaac
acagaccgtgatgatgactatgtagggtttgtgttctccttccagtccagcagacggttc
tacgttgtcatgtggaaacaggtcagccaggcttactgggagaagagtccttccagggca
tttgggaacgctggtgtctctctcaaagtggtcaactcaagctcaggccctggggaggcc
ctccgcaacgccctgtggcacacaggaaacaccatacagcaggttcgcacactgtggcat
gaccccaacaacacgggctggaaggactacactgcctaccgctggcacctcatccaccga
cccaagaccggcttcataaggatagtggtgtctgagggcaggtccatcctagctgactct
gggccggtgtatgacagaactctggctggagggagactcggactgtttgtcttctcacaa
gaacatatcctcttctctgacctcagatacacttgtagagataactga
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