Oncorhynchus tshawytscha (Chinook salmon): 112239517
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Entry
112239517 CDS
T05605
Name
(RefSeq) TBC1 domain family member 8 isoform X1
KO
K19951
TBC1 domain family member 8/9
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112239517
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112239517
Endosome - Golgi transport
Rab GTPases and associated proteins
112239517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
GRAM
RabGap-TBC_2
PH-GRAM_MTMR6-like
EF-hand_1
Ty3_capsid
Motif
Other DBs
NCBI-GeneID:
112239517
NCBI-ProteinID:
XP_024263733
LinkDB
All DBs
Position
LG03:56868649..56896004
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AA seq
1147 aa
AA seq
DB search
MWLNPEEVLLKNALKLWVTEKSNEFFLLQRRRGHGDTGGKFTGLLVGALDSVLDSNARVT
PFRILLQMPGSQVSWTIACGAAVGEMNRHWDWLVQNLLHSLSVFENKEDVASFVKGKVKG
LIAEEVRGRQAAQEEEPEKFREALLKFELCFGLPSSEKLVTTYSCCCWKGRVPRQGWLYL
SINHMAFYSFLLGKEVKFVIPWAEVTRLERVSTGLMTDMVRVMTRRCQLDFSMFLSLDEA
FGVIGQLADIALRRLLDSEGLELDRVLQQSSNITKRVLEEQALRTYVLALFRLPRGERLQ
EVALCSVWTPHARCHTTGTLFTTDSYLCFASREEGHCSLLIPLSEVISIEKAESTSLLPN
PVIVSVRSKKAFQLIELQDRDSLVDGLTSRLRALQWKHSMFRSKKSLTSSSPYYTFCYDT
MYCDGEDIEERALRQTVNTEALMACYHHSQPDPNNSTATMEQVKERLWEDHFPEYGRGVH
MFRTEKIQKLVAMGIPESLRGELWMTFSDASSELASHPGYYSGLVTESMGQSSLATEEIE
RDLHRSLPDHPAFQNVKGIAALRRVLTAYAHRNPKIGYCQSMNILASVLLLYTKEEEAFS
LLVAVCERMLPDYFNRRVIGAQVDQSVFEELIRDRLPELAEHIPDLSPLSSISLSWFLTL
FLSVLPFRSAVCVVDCFFFHGIKAIFQLGLAVLDANATALCASADDSQALMILTGFLDQV
KYDEDPSPPTPHPLSSQSGEEEGRPPVKQHTLITDLIADSYEKFGDLTVRQIEKLRCRHR
IQVLQAHEDTTKENALRVVTPDVSLSPENLADVYDLFKTEHFINLYWGDGGTTLALQHHD
PGRPYVEQYRVDRVQFKSLYMLLVPWLCGFHTDTVAHRTFTLLDQDRDSLITFREFAGWL
DTLYFEELNEKVRLLYRLHIPPALTESEDDPSPLKSPQLSTTRPLHVELPNAPDVCVHVE
GEMRDFQEQLKQMLKDLAKEKEKDVEQPVPPMNQREFIQFCKTLYSMFHGNPDENELFQA
IATVTSLVLQIGEVGHRSRCSGSEVSSEGGAGDEVEDDHREGSQEDHPVFSTEEEGERKE
GTSKSSGSESQSEWAVSYAQILASLLTEQQLVNFFEKPMDLSAKVAEAKVKQYHERAGLL
MLQQGTS
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgtggttgaatccggaggaagttttgctgaaaaatgcattgaagctttgggttaccgaa
aaatctaacgaattcttccttttgcagcgcagaagagggcatggagacacaggggggaaa
tttacaggtcttctggtgggagctctggactcagtgctggactccaatgcccgggtcaca
ccgttccgtatcctactacagatgcctgggtcacaggtcagctggacaatagcttgtggt
gctgctgtcggagagatgaacagacattgggactggctggtccagaacctactacactct
ctctcagtgtttgagaacaaggaggatgtcgccagcttcgtaaaagggaaagtcaagggt
ctgatagcggaggaggtaagggggaggcaggcggctcaggaggaggagcctgagaagttc
cgggaggcgctgctgaagtttgagctatgtttcggcctgccctcctcagagaagctggtc
accacctactcctgctgctgctggaaggggcgggtcccccggcagggctggctctacctc
agcatcaaccacatggccttctactccttcctgttgggaaaagaagtgaagtttgtgatc
ccgtgggcggaggtgacgaggctggagcgggtctctacgggtctcatgacggacatggtg
cgtgtgatgacgcggcggtgccagttggacttctccatgttcttgagcctggatgaggcg
tttggggtcattggtcagctggctgatattgccctgcgacgcctgctggacagtgaaggc
ctggagctggaccgagtcctccagcagtcctccaacatcaccaagagggttctggaggag
caggcattaaggacgtatgtcctggctctatttcggctaccacggggcgaacgtcttcag
gaggtggcgctgtgttcagtgtggacgccccatgcccgctgtcacacgacaggaacactc
ttcaccaccgacagctacctatgcttcgccagccgagaggagggccactgcagcctgctt
atccctctctcagaggtgatctccatagagaaggcggagagcaccagcctgctgccgaac
ccagtgatcgtcagcgtgaggagtaagaaagccttccagctgatcgagctgcaggacaga
gacagcctggtggacggcctgacatcacgcctcagagccctccagtggaaacactccatg
ttccgcagcaagaaatctctgacctcctcgtctccctactacaccttctgctatgacacc
atgtactgtgacggggaggatatcgaggagagagcactacgtcaaacagtgaacacagag
gctctaatggcatgctaccatcactctcaacctgaccccaacaacagcacggctaccatg
gagcaggtgaaagagcgtctatgggaggaccacttcccggagtacggtcgaggcgtccac
atgttccgcacagagaagatccagaagctggttgccatggggataccagagtcgctacgg
ggagagctatggatgaccttctctgatgcctcatcagagttggcatcccacccaggctat
tactcggggctggtgacagagtctatggggcaaagcagtctggccacggaggagatcgag
agagacctgcaccgctctctgccagaccaccccgccttccagaacgtcaaaggcattgcc
gcgttgcgccgtgtcctcaccgcatatgcccaccgcaaccccaagattggctactgccag
tcgatgaatatcctggcatctgtgctgctgctgtacactaaagaggaggaggccttctca
ctgctagtggctgtgtgtgagagaatgttacctgactacttcaaccgcagagtcataggt
gctcaggtggaccagtcagtgtttgaagagctgatccgggatcgtcttcccgagctggcc
gagcacattcccgacctctcccccctctcttccatctccctgtcctggtttctcaccctc
ttcctcagcgtgcttcccttccgcagcgctgtctgtgtggtagactgcttcttctttcac
ggcatcaaagccatcttccagctggggctagctgtgctggatgctaacgctacggcactg
tgtgctagtgcagatgacagccaggcactcatgatcctcactggttttctggaccaggtg
aagtacgatgaggatccatctccccctacccctcaccctctctcgtctcagagtggggag
gaggagggcagaccgcctgttaaacaacacaccctgatcactgacctcatcgctgactcc
tatgagaaatttggagacctgacggtgagacaaatagagaagttgcgatgcagacaccgg
atccaggttctccaagcacacgaggacaccaccaaggagaatgcgctcagggtggtgacc
ccagatgtctctctctcccctgaaaacctggctgatgtctacgacctcttcaagacagag
cacttcatcaacctgtactggggcgatgggggcaccacattggccctccagcaccatgac
ccaggccggccctatgtagagcagtacagagtggaccgggtccagtttaagagcctgtac
atgctgctggttccctggctttgtggctttcatactgacaccgtggcccaccggaccttc
acactactggaccaggacagagactcactcatcaccttcagagagttcgctgggtggctg
gatacactatactttgaggaactgaatgaaaaggtcagactactgtatcgtttgcacata
cctccagctctgactgaaagtgaggatgacccatctccactgaagagccctcagctgtcc
actaccagaccactccatgtagagctgcccaatgctcctgatgtgtgtgttcatgttgaa
ggggagatgagagactttcaggaacagttgaaacagatgttgaaagacctggctaaagag
aaggagaaggatgtggagcaacctgtacctccaatgaaccagagggagttcatccagttc
tgtaagaccctctacagcatgttccatggcaacccagatgagaatgagctctttcaggcc
atcgctacagtgaccagcctggtgctgcagatcggcgaggtcgggcaccgcagccgctgc
tcagggtcagaggtcagcagcgagggtggggccggggacgaggtagaggacgatcacagg
gaggggagtcaagaagaccatcccgtcttcagcaccgaagaagaaggagagagaaaggag
gggaccagcaagagttcagggtctgagagtcagagcgagtgggcggtcagctacgctcag
atcctggcttctctcctcacagaacagcagctagtcaacttctttgagaaaccgatggac
ctgtcagcaaaggtggctgaggcaaaagtgaaacagtaccatgaaagggctggtctgctt
atgctccagcaagggaccagctga
DBGET
integrated database retrieval system
