Oncorhynchus tshawytscha (Chinook salmon): 112239561
Help
Entry
112239561 CDS
T05605
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112239561 (pdzrn4)
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112239561 (pdzrn4)
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
112239561 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
112239561
NCBI-ProteinID:
XP_042170379
LinkDB
All DBs
Position
Unknown
AA seq
785 aa
AA seq
DB search
MVEVIRRDPIVVQVVRRHGNPTHSHQTLQEVHVVDVCTQTDITFEHIMALAKLRPATPPV
PDICPFLLSDSCHSIHTMEHEFYECPEYLSNTPAEVDRPEEFEYEQVELCRLNSQEKLGL
TLCYRTDDEEDTAIYVSHVGPNSIAARDGRIREGDRILQINGCDVQDRQEAFTLLSNEES
RSIVLLVTRPEEAWLDEEHNELLEELKMEILEERRNEEVQKTGGGEEQAKQLEEDDVMTD
TATCSSNTQDKDSGLGTGRNEESSEQEVLLARVHRRPAQGLRDRWRAKHGQELGRRVVVP
SDTQGPRGLIQAQEGEGGVGLGLECDSRFKQLLELKCQIRNSGECGVYYSRRSTIECSLT
EQSRVGVSGGGGMEQELRMLNDELRSIELECQSIMQAHQLRKNQRDPPCTPMCSPGQSPK
HGREQHAKLSDINEHPGERQWDSDKLRGDKDSSSAYNTAESARSTPLGMERSPDHSLQRR
ISLTNQKNLRSTMAASGQSIPIPDRELMSETSTGTTTHSRQDPNPSPGTTVISSSPDQSN
PSPSESDPALPADDERCDRTRSHRGPRRVPLYPSPYHTAPQQGASPAHARHLQNYMQQLL
QQTSSLETYSQSQLSLLSVCRDRSNRPGEPRLEWKVKVRADGTKYVARRPARDRILRERA
LRIREERSGGMTTDDDTMSEMKMGRYWSKEERKQQLARAREQRRRREYMQRSRLECLREG
PGSGAEGRKEVNILELSHKKMMKKRNKKILDNWMTIQELMSHGARAPEDQGTKQVHNAFL
SVTTV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggtggaggtcatcagaagagaccccatcgtggtgcaggttgtccgtcgccatggcaac
cccacccactcacaccaaacattacaggaagttcacgtggtggacgtgtgcacgcagacg
gacatcacttttgaacacatcatggccctggctaagctgaggcctgctactccacctgta
cccgacatctgcccctttctgctgtcagacagctgtcactccatccacaccatggagcat
gaattctacgagtgtccagagtacctttccaacaccccagctgaagtggacaggccagag
gagtttgagtatgagcaggtagagctctgtcggctcaacagtcaggagaagttgggtctg
acgctgtgctatcggactgacgatgaagaggatacagctatctacgtcagccacgttgga
cccaacagcattgctgccagggacgggcgcattagggaaggagatcgaatattacagatc
aatggctgtgacgtacaggacaggcaggaagctttcactctcctgtccaatgaggagtcc
aggagtatcgttctcctggtgaccagaccagaggaggcgtggctggatgaggagcacaat
gaactcctagaggagctgaagatggagatccttgaggagaggaggaacgaggaggtgcag
aagacaggaggaggagaggagcaggccaagcagctggaggaggatgatgtcatgacagac
acggccacgtgttcctccaatactcaggacaaagacagcggcttggggacggggcgcaac
gaggagagctccgaacaggaagtcctcctagcccgtgtccaccggaggcctgcccagggc
ctgagagaccgatggagggccaagcatggccaggagctgggcaggagggtggtggtaccc
tcggacacccagggacccaggggtctgatccaagcccaggagggtgagggtggagtgggg
ttaggactggagtgtgacagccgcttcaagcagctcctggagcttaagtgccagatccgt
aacagcggggagtgtggtgtgtactatagcaggagaagcaccatcgagtgcagcctgacg
gagcagagcagggtgggggtcagtggtggtggagggatggaacaggagctgaggatgttg
aacgatgagctgaggagtatcgagctggagtgtcagagcatcatgcaggcccaccagctc
cgtaagaaccaaagggatcccccctgcacccctatgtgctccccaggacaaagccccaaa
catgggcgtgagcagcatgccaagctgtccgatatcaacgagcatccaggggagaggcag
tgggacagcgacaagctaaggggggacaaggacagctccagtgcctataacacggctgag
agcgccaggtccactcctctaggcatggagagatccccagaccactctctacagagacgc
atcagcctcaccaaccagaagaacctccggagcaccatggcagcctccggccagtccatc
cccatcccagacagagagctcatgagtgagacctcgaccgggaccaccacacacagccga
caggatcccaacccaagccctggaaccacggtcatctccagcagccccgaccagtccaac
ccttccccctccgagtcagacccggccctgcctgcagatgacgagcgctgcgaccgcacc
aggagccaccgggggccgcgcagggtccctctctacccgtccccttaccacacagccccc
cagcagggcgcctctccagcccacgccagacaccttcagaactacatgcagcagctcctc
cagcagacctccagtctggagacctactcccagtcccagctcagcctcctcagcgtctgc
cgggaccgctccaatcgcccgggggaaccacgcctcgaatggaaggtcaaagttcgagcc
gacgggacgaagtatgtagcccggcgaccggcgagggaccggattctacgagaacgggcg
ctgaggatcagggaggagcgtagtggagggatgaccacggacgacgacactatgtccgag
atgaagatggggcggtactggagtaaagaggagagaaagcagcagctggccagagccagg
gagcagaggaggaggagggagtacatgcagaggagccggctggagtgtctcagagagggc
cctgggagcggggccgagggccgtaaagaggtcaacatcctggaactcagccacaagaag
atgatgaagaaacgcaacaagaagatcctggataactggatgaccatccaggaactaatg
agtcacggggccagagcacctgaggaccaggggactaaacaagtacacaatgccttcctg
tctgttactacagtatag
DBGET
integrated database retrieval system
