Oncorhynchus tshawytscha (Chinook salmon): 112239650
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Entry
112239650 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: protein Atg16l2
KO
K20868
autophagy-related protein 16-2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112239650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112239650
03029 Mitochondrial biogenesis [BR:
otw03029
]
112239650
Membrane trafficking [BR:
otw04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
112239650
Others
Rab GTPases of specific organelles
Auto phagosome
112239650
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
112239650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ATG16
ANAPC4_WD40
NBCH_WD40
Ge1_WD40
Cytochrom_D1
VID27
Motif
Other DBs
NCBI-GeneID:
112239650
NCBI-ProteinID:
XP_042153658
LinkDB
All DBs
Position
LG14:complement(57191494..57245920)
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AA seq
604 aa
AA seq
DB search
MAALGAERGEASKVEEKINTQKTADSWKRHIIRQLKHRDKYQKAMFQDVILAYINLLERS
NQRALITKGILGSGSRYPASSNESLTSLISKNDDLKKTTGELAYQVLELQQEIKIKDSVL
EEQHARMCEVKKDLLGVQAEDGSLAVRVAEVTEGNRLLKREYDSLLEQHHDMDQTFREEK
LRGQEMLEELVRRKQHAAIRMNSRNERRVRAREASLQKELETAGKVKVTIDVGSVSAPAS
REASPKSDLAERRTTRLFRSASVTSPPRILDSIKELFDRKKRRGNSLCLSLEEELYVPVG
ICLAARVPVRALHVLDAHELGINAVRFSSSCNLLATGGTDRSIKLWDVKAGMLHNRGTLD
GSNEGITSIEFDQTGTRVIAASYDKSALFWRLDDSAPKLTLTGHSRKVTAAKFKCSLRQV
VTGSADRTVKIWDLHRAACIQTIEVLSYCSDVVCSEHVIVSGHYDRKIRFWDSRAASCTQ
EVPLXGKVTSLDISTDHRQLLSCSRDESLQVVDLRMNSSRICFRAEGFKCGCDSTKAIFS
PDGSYLAAGSADGAVYIWNVNSGNLETQLPDMHSSSINAVAWSGSGEYVVSVDKSRRAVL
WSGI
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctaggagcggaacgtggcgaggcgtctaaagtcgaagaaaagataaacacc
cagaagacggccgactcatggaaacgtcatatcatccgccaactcaaacatcgggataag
tatcagaaggcgatgtttcaagatgtcatactggcatatattaatctgctggagaggtcc
aatcagagagccctcatcacgaaaggcatcctgggatctggttcaaggtaccctgcctcc
tccaacgaatccttgacgtctctgatttccaagaatgatgatctgaagaaaacaactggg
gagctggcctaccaggtattggagctccagcaggagattaagatcaaagactccgtactg
gaagagcaacatgccaggatgtgtgaggtgaagaaggatctgctgggggtgcaggctgag
gatggaagtctggcggtgcgtgttgccgaggtgacggaggggaaccggctgttgaaacgg
gagtacgactccctgctggagcagcaccatgatatggaccagacattcagagaggagaag
ctcagaggtcaggaaatgctggaggaactggtccggaggaagcagcacgcagccatcagg
atgaacagccgcaacgagagacgggtcagagccagagaggcaagtcttcagaaggaactg
gagaccgccgggaaggtgaaggtgaccatagatgtcggctcggtcagtgccccggcctcc
agagaagcctcccctaagagtgatctggccgagagacggacaactagactgttcaggtca
gcctcagtaacatcccctcccaggattctagattccatcaaagagctttttgatagaaag
aagcgtcgggggaactcgctgtgtctgagtctggaggaggagctgtatgttcctgtaggg
atctgtctggctgccagggtccctgttagggctctgcatgtcctggatgcccatgagttg
ggcattaatgcagtgaggttcagctccagttgtaacctgcttgctactggagggacagac
agatccattaagctgtgggacgttaaagccggcatgctccacaacagaggtacactagat
ggcagcaacgaaggaataaccagcatagagtttgaccaaacaggcaccagggttatagca
gcgtcatatgataaatcagctctgttctggcggctggatgactctgctcccaagctcact
ctgacaggccactcacgtaaagtgacagcagccaagtttaaatgcagcctgcgccaggtg
gtgacaggaagcgcagacaggaccgtcaagatctgggatctccaccgcgctgcttgtatc
cagaccattgaggttctatcttactgcagtgatgtggtgtgttctgagcacgtcatcgtc
agtggacactatgacaggaagatacgcttctgggacagcagggctgccagctgtacccag
gaggttcctctcncagggaaggtaacatctctggacatctctactgaccaccgtcagctc
ctcagctgctccagagacgagagtctgcaggtggtcgaccttcgcatgaacagctccagg
atatgcttcagagctgagggcttcaaatgtggctgtgacagcaccaaggctatattcagt
cctgatgggagctacctggcagcaggatcagcagatggagccgtttacatctggaacgtc
aactctggcaacctggagacacaactaccggacatgcacagttcgtccatcaacgcggtg
gcctggtctgggtccggggagtacgtggtcagtgtggacaagagccggcgtgccgtcctc
tggagcggcatttaa
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