Oncorhynchus tshawytscha (Chinook salmon): 112239650
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Entry
112239650 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: protein Atg16l2
KO
K20868
autophagy-related protein 16-2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
otw04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
112239650
04140 Autophagy - animal
112239650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112239650
03029 Mitochondrial biogenesis [BR:
otw03029
]
112239650
Membrane trafficking [BR:
otw04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
112239650
Others
Specific organelles associated proteins
Auto phagosome
112239650
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
112239650
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
ATG16
DSE1_N
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_VPS8
WDR90_beta-prop_4th
CFAP251_N
Beta-prop_RIG_2nd
Beta-prop_NOL10_N
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_NWD2_C
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_WDR41
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_ACSF4
PAC11
Ge1_WD40
Beta-prop_SPT8
Beta-prop_DCAF12
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
FKBP15
Tricorn_2nd
Beta-prop_Vps41
Cytochrom_D1
VID27
Tuftelin_like
Motif
Other DBs
NCBI-GeneID:
112239650
NCBI-ProteinID:
XP_042153658
LinkDB
All DBs
Position
LG14:complement(57191494..57245920)
Genome browser
AA seq
604 aa
AA seq
DB search
MAALGAERGEASKVEEKINTQKTADSWKRHIIRQLKHRDKYQKAMFQDVILAYINLLERS
NQRALITKGILGSGSRYPASSNESLTSLISKNDDLKKTTGELAYQVLELQQEIKIKDSVL
EEQHARMCEVKKDLLGVQAEDGSLAVRVAEVTEGNRLLKREYDSLLEQHHDMDQTFREEK
LRGQEMLEELVRRKQHAAIRMNSRNERRVRAREASLQKELETAGKVKVTIDVGSVSAPAS
REASPKSDLAERRTTRLFRSASVTSPPRILDSIKELFDRKKRRGNSLCLSLEEELYVPVG
ICLAARVPVRALHVLDAHELGINAVRFSSSCNLLATGGTDRSIKLWDVKAGMLHNRGTLD
GSNEGITSIEFDQTGTRVIAASYDKSALFWRLDDSAPKLTLTGHSRKVTAAKFKCSLRQV
VTGSADRTVKIWDLHRAACIQTIEVLSYCSDVVCSEHVIVSGHYDRKIRFWDSRAASCTQ
EVPLXGKVTSLDISTDHRQLLSCSRDESLQVVDLRMNSSRICFRAEGFKCGCDSTKAIFS
PDGSYLAAGSADGAVYIWNVNSGNLETQLPDMHSSSINAVAWSGSGEYVVSVDKSRRAVL
WSGI
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctaggagcggaacgtggcgaggcgtctaaagtcgaagaaaagataaacacc
cagaagacggccgactcatggaaacgtcatatcatccgccaactcaaacatcgggataag
tatcagaaggcgatgtttcaagatgtcatactggcatatattaatctgctggagaggtcc
aatcagagagccctcatcacgaaaggcatcctgggatctggttcaaggtaccctgcctcc
tccaacgaatccttgacgtctctgatttccaagaatgatgatctgaagaaaacaactggg
gagctggcctaccaggtattggagctccagcaggagattaagatcaaagactccgtactg
gaagagcaacatgccaggatgtgtgaggtgaagaaggatctgctgggggtgcaggctgag
gatggaagtctggcggtgcgtgttgccgaggtgacggaggggaaccggctgttgaaacgg
gagtacgactccctgctggagcagcaccatgatatggaccagacattcagagaggagaag
ctcagaggtcaggaaatgctggaggaactggtccggaggaagcagcacgcagccatcagg
atgaacagccgcaacgagagacgggtcagagccagagaggcaagtcttcagaaggaactg
gagaccgccgggaaggtgaaggtgaccatagatgtcggctcggtcagtgccccggcctcc
agagaagcctcccctaagagtgatctggccgagagacggacaactagactgttcaggtca
gcctcagtaacatcccctcccaggattctagattccatcaaagagctttttgatagaaag
aagcgtcgggggaactcgctgtgtctgagtctggaggaggagctgtatgttcctgtaggg
atctgtctggctgccagggtccctgttagggctctgcatgtcctggatgcccatgagttg
ggcattaatgcagtgaggttcagctccagttgtaacctgcttgctactggagggacagac
agatccattaagctgtgggacgttaaagccggcatgctccacaacagaggtacactagat
ggcagcaacgaaggaataaccagcatagagtttgaccaaacaggcaccagggttatagca
gcgtcatatgataaatcagctctgttctggcggctggatgactctgctcccaagctcact
ctgacaggccactcacgtaaagtgacagcagccaagtttaaatgcagcctgcgccaggtg
gtgacaggaagcgcagacaggaccgtcaagatctgggatctccaccgcgctgcttgtatc
cagaccattgaggttctatcttactgcagtgatgtggtgtgttctgagcacgtcatcgtc
agtggacactatgacaggaagatacgcttctgggacagcagggctgccagctgtacccag
gaggttcctctcncagggaaggtaacatctctggacatctctactgaccaccgtcagctc
ctcagctgctccagagacgagagtctgcaggtggtcgaccttcgcatgaacagctccagg
atatgcttcagagctgagggcttcaaatgtggctgtgacagcaccaaggctatattcagt
cctgatgggagctacctggcagcaggatcagcagatggagccgtttacatctggaacgtc
aactctggcaacctggagacacaactaccggacatgcacagttcgtccatcaacgcggtg
gcctggtctgggtccggggagtacgtggtcagtgtggacaagagccggcgtgccgtcctc
tggagcggcatttaa
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integrated database retrieval system
