Oncorhynchus tshawytscha (Chinook salmon): 112239705
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Entry
112239705 CDS
T05605
Symbol
paxbp1
Name
(RefSeq) PAX3- and PAX7-binding protein 1
KO
K13211
GC-rich sequence DNA-binding factor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112239705 (paxbp1)
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112239705 (paxbp1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
GCFC
NTR2
Motif
Other DBs
NCBI-GeneID:
112239705
NCBI-ProteinID:
XP_042167179
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All DBs
Position
LG33:complement(48823612..48874721)
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AA seq
918 aa
AA seq
DB search
MFKKAKRSNLRRRNESDEDEKEESQPPCGPFAEDIPVLDAANADTLSGVNVDLHHGNGFQ
SKAVKKEKKTRDVGGPPKASLLSFDDDEDEAEVFRVKKSNHSKKIVKQLKKEYKEDLEKV
CYVKQEPNTDVWPQPLASIKEEPASRAGSEQGEEEMEVDSTDEQEPKTQSQSLASKTPTT
TAAGAFSNTSTLSTLSTLRPGEIPDAAFIHAARKRRQMARELGGDAPLVETDTPKKRLVR
EEEEEGDGSDDEDEDEKRISFSGVKNKSQRTRIAEEIGIEGSDDEALDTGGQDEEVSRWE
QEQIRKGISIPQVQSCQPDRWRVLHSSTTPSSKLTTACPPTAASLRPQQPYSSTYSLPYS
YSSKPEGCTLVYSAPGGDLSPVTTDLVKTRLRDRLSQMRVGHDANAKRYDQIQEELEAAQ
NTIRRLEGSSNDDAEQYKFLQEMRGYVRDLLECFGEKVPTVAELEGNMHQLLRQRACRLV
QRRQDDIKDESAEFASLSSKAVMAPNLMSVDSFGRDRTVYQEHARQRRIAEREARRTRRR
QAREQNGKRAEHLEGLSSDDEETSTDLTSYCLERDRIVRESKKVFEDVLEDFHSLDSIKS
RFEVWRHLYFTCYRDAYIGLCLPKLFNPLVRLQLITWSPLQEKCANFEYMLWFESLLFYG
CEEQSGMKKGDVDINLLPAIVERVILPKLAVLAEQVWDPLSCSQTTRLVSFVTRLLRGYP
TVLNGDNRNTQEFLKTIVLRTRRTLDDDVFLPLYPKNVLENKNSGPYLFFQRQFWSCVKL
LGNVLQWSGVLSGSTVRELALDSTLNRYILSALQNAEAGEDSVLKSQRVVECFPAQWFVG
LKGQQTLPQLEPFCRYLTHLASALLRGSLGGSDIDKRNAKEQIKEVVKLLARLNALDHLI
TVATEHGIKDITPLLDSK
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaaaaagcaaagagatctaatttaagacggagaaatgagtcggacgaggacgag
aaagaagaaagtcagccgccatgcgggcctttcgccgaggatatcccggtgctcgatgcc
gccaacgcagacaccttgtccggggttaacgtggacctgcaccacggcaacgggtttcag
tcaaaggccgtaaagaaggaaaagaaaactcgggatgtagggggacccccgaaagccagt
ttgctgagctttgacgacgacgaagacgaggccgaggtgttcagagtaaagaaatccaac
cacagcaagaagatcgtgaagcaactgaagaaagaatacaaggaggatctggagaaggtg
tgctatgttaaacaagagcccaacaccgacgtgtggccccagcccctggcctccattaaa
gaggagcctgccagcagggcaggcagtgagcaaggagaggaggagatggaagtggacagt
actgatgaacaggagcctaagacacaaagccagagcctcgcctccaagactcccacaaca
actgcagccggagccttctcaaacaccagcaccttgtccacgctcagcaccctgcgtcca
ggtgagatcccggacgctgccttcatccacgcggcaaggaagcgtcgtcagatggcgagg
gagctaggcggcgacgcccccctggtggagacggacacgcccaagaagcgtctggtccga
gaggaggaagaggagggagacgggagcgacgacgaagacgaagacgagaagaggatcagc
ttcagtggagtcaagaacaagagccagaggaccaggatagcagaggagatcggtatagag
ggtagtgatgacgaggcgttggatactggaggtcaggatgaggaggtgtcacgctgggaa
caggagcagatacgcaaagggataagtatcccccaggtccagtcctgccagcccgaccgg
tggcgtgtactacacagcagcactacccccagcagtaagctcaccacagcctgcccccct
acagcagcaagcctgagaccccagcagccctacagctctacctacagcctgccctactcc
tacagcagcaagcctgagggttgcacactggtctacagtgcccctggcggtgacctctca
cctgtcactactgacctggtcaagacacgcctcagagacaggctgagccagatgcgtgtg
gggcatgatgctaatgctaagcgctacgatcagatccaggaagaactcgaggcagctcag
aacaccattcgccggctcgagggttcatccaatgacgacgcagaacagtataaattcttg
caagagatgcgagggtatgttcgagacttgcttgagtgtttcggtgaaaaggttcccacc
gtggcggagctggagggcaacatgcaccagttactaaggcaacgggcctgtcggctggtc
cagcggcgccaggatgatattaaagatgaatcggcggagtttgccagcctttcaagtaag
gctgtgatggcacctaacctcatgtctgttgactcatttgggagagacaggacagtctat
caggagcacgccagacagagaaggatcgctgaacgggaagccagacgaacgcggcggcgg
caggcgcgggagcagaacgggaaaagggcagagcatctagaggggctgtcctccgacgat
gaggagacatcgactgacctcacatcgtactgtctggagagagatcgtatcgtgcgtgag
agtaagaaggtgtttgaagatgtgctggaggacttccattctctggacagtatcaagagt
cgttttgaggtgtggagacatctctacttcacctgctacagagacgcttacataggactg
tgtctgcccaaattattcaaccccctagtacgactacagctcatcacatggagccctcta
caggagaagtgtgctaacttcgagtacatgttgtggtttgagtcgttgttgttctatggc
tgtgaggagcagagtgggatgaagaaaggagatgtcgacatcaacctactgccggctata
gtggagagggttatactgccaaaactagcagtgctcgctgaacaggtgtgggatcctctg
tcctgtagtcagacaaccagactggtgagcttcgtgaccagactcctcagaggataccct
actgttctgaacggagacaacaggaacacacaggagtttctgaagaccattgtattgagg
accagaaggactctggatgatgatgtgttcttacctctttaccccaagaatgtgttggag
aataagaacagtggtccctacctcttcttccagaggcagttctggtcctgtgtcaagttg
ctaggtaacgtcctccagtggagtggtgtattgtctggttccacggtgagggagttggct
ctggactccaccctgaacagatacatcctgtcagccctacagaacgctgaggctggggaa
gacagcgtgctgaagagtcagagggtggtggagtgtttcccagcccagtggtttgtaggg
ttgaaaggtcagcagaccctgcctcagctggagcccttctgtcgttacctcacccacctg
gcctctgctctgctgagaggttctctgggggggtccgacatcgacaagaggaacgccaag
gagcagatcaaggaggtggtgaagctcttagctcggctcaacgcactggatcacctcatc
accgtggcaacggaacacggcatcaaggacatcacacctctactggactccaagtga
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