Oncorhynchus tshawytscha (Chinook salmon): 112239829
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Entry
112239829 CDS
T05605
Symbol
rfx1a
Name
(RefSeq) MHC class II regulatory factor RFX1a isoform X1
KO
K09173
regulatory factor X 1/2/3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112239829 (rfx1a)
Transcription factors [BR:
otw03000
]
Eukaryotic type
Other basic domains
RF-X
112239829 (rfx1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX1_trans_act
RFX_DNA_binding
DUF3176
VanW
Motif
Other DBs
NCBI-GeneID:
112239829
NCBI-ProteinID:
XP_042171702
UniProt:
A0AAZ3PJG4
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MATTGYVGELQPVTTQPQGAASVTVAGQSSASAAPHTVVAPTQQFLAQLQTTVGAPAAAA
GHTTPPAQATPTAAQKTAVVQVAPTQAPPPQTQYVTAEIQGSSSQANNAQNAPQYIVVTV
TEGSLHSSDSVSDSSPPPAVVQQTGVPTQVVQQVQAAQQRSVVQATSQITAKTEQGITTQ
LSVTNLQPVHLTQEVQQQLQQVPVQHVYTNQVQYVEGGDNNYTTSTIRSGSFTYTDTPLY
TQTTAAPYYEAPPTSGSQVPTTGTPLTVSVTTGSTGGVSMYVAGTGQIVANPAATSGGGA
TVVATGGTANGTGEGAGANGSGGSYVIQGGYMLSGNSQGGYSTHNARSSPATVSTTEGEE
GSGVPSADKKVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVF
MGLRTRRLGTRGNSKYHYYGLRIKACSSLIRLMEDQQHLAMRQQPFSQKQRLKPVQKVEG
MTNGMAAGSGQQQQQQGAGLSDISAQVQQYQQFLDASRTLPEFPDLDLQGKALPEGIELE
HIKSFQLLYREHCEAILDVTINLQFTLVETLWKTFWRFEESQSGDTGTLAVHDESEKRLP
KDCLVILCKYDPVLRWSRDCDNTLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLT
NAMMNIPEEMVRIKVTSASSFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDF
ANVQEQASWVCRCEDRVVQQLEQDFKLTLQQQNSLEQWAAWLDGVVSQVLKPYQASTAFP
KAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPI
AVMGEFASLGRSLNPLDPDKEEEEEEEEESDDECQELSLPSDGAGLGEESLEPPTKLART
DQRVLFTTGQD
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggccacgacaggctacgttggggagttgcagcccgtgacgacccagccccaaggggca
gcgagtgtgacggtggctggacagtcctcagcatccgctgccccacacaccgtggtagct
cctacgcagcagttcctggctcagcttcagaccacagtgggggctcctgcagccgcagca
ggacacaccacaccccctgcacaagccactcccacagcggcacagaagacagcagttgtc
caggtggcgcccacacaggctcctcccccccagacccagtatgtgacggctgagatccag
ggttcctcatcacaggccaacaacgcccagaacgccccccaatacatcgtagtcaccgtc
acagagggctctctccattcaagtgactctgtgtctgactcgagccctcctccagctgtg
gtacagcagactggggttcccacacaggtggtgcagcaggtgcaagcagcacagcagagg
tcagtggtgcaggcaacgtcccagatcacagccaagactgaacagggtatcaccacccag
ctgagtgtcaccaacctgcagcctgtccacctcactcaggaggtgcagcagcagctccag
caggtgccagtgcagcatgtgtacaccaatcaggtgcagtatgttgaagggggagacaac
aactacaccaccagcacaattcgctcaggcagcttcacctacacagacacccctctgtac
actcagaccaccgccgccccttactacgaagcccctcccacctctggctcacaggtcccc
accaccggcacacccctgaccgtctccgtgacaacgggctccaccggtggtgtgtctatg
tacgtggctggcacaggccagattgtggccaatccggcggccacctctggtggtggggca
acggtggtggcgacagggggaacagccaatgggactggggaaggggcaggggctaatgga
agcgggggcagctatgtgatccagggggggtacatgctgagtggcaacagtcaggggggc
tactccacccacaacgcccgctcctctcctgccaccgtcagtacaacagagggcgaggag
ggtagtggcgtaccgtcggcagacaaaaaggtgcagtggctgctagataactatgagaca
gctgaaggggtcagtctgcctcgctccaccctctactgccactacctgctgcactgccag
gagcagaagctggagcccgtcaacgctgcctcctttgggaagctgatcagatccgtgttc
atggggctacgcacacgccgcctgggcacccgggggaactccaagtaccactattacggc
ctgaggatcaaggcctgctcctctctgattagactgatggaggaccagcagcacctggcc
atgagacagcagcccttctctcagaaacagaggttgaagccggtgcagaaggtggagggg
atgaccaatggcatggcggcaggatcgggccaacagcagcagcagcagggggcggggctc
tctgacatcagtgcccaagtgcagcagtaccagcagttcctggacgcgtctcgaaccctc
ccagagttccctgaccttgacctgcaggggaaggccctaccggagggcatagaactggag
cacatcaagagcttccagctgctgtatcgggaacactgtgaggctattctggacgtgacg
atcaacctgcagttcaccctggtggagaccctgtggaagaccttctggaggtttgaagag
agccagagtggagacactggcacactggctgtacatgatgagtctgagaagcgcctgcct
aaggactgtctagtgatcctgtgtaagtacgaccctgtgctccgctggagccgcgactgt
gacaacaccctgtaccagggcctggtggagatcctcatccccgatgtgctgcggcccatc
cccagtgccttaactcaagccatccgcaactttgccaagagtctggagagttggttgacc
aacgctatgatgaacatcccagaagagatggtccgcattaaggtaacgtcagccagttcg
tttgcccagacgctgcgcaggtacacctctctgaaccacttggcccaggcagccagggct
gtgctacagaacacagctcagataaaccagatgctcagcgacctcaaccgcgtggacttc
gccaatgttcaggagcaggcgtcgtgggtgtgtcgctgtgaggaccgtgtggtgcagcag
ttggagcaggacttcaagctgaccctgcagcagcagaactctctggagcagtgggctgcc
tggctggacggggtggtctcccaggtcctaaagccctaccaggccagcaccgccttcccc
aaagcagccaagctcttcctgctcaagtggtccttctacagttccatggtgattagagac
ctgactctgcgtagtgctgcaagcttcggatccttccacctgatcagactgctgtatgat
gagtacatgtactacctgatagaacacagagtggcccaggctaaaggagagacacccatc
gctgtcatgggagagttcgccagtcttggccggagtttgaacccactggatccagacaaa
gaagaggaagaggaggaggaagaggagagcgatgacgagtgtcaggagctgtctctgccc
tctgacggggcggggctgggggaggagtctctggagccgcctaccaagctggccagaacc
gaccagagagtactctttaccacgggccaggactga
DBGET
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