Oncorhynchus tshawytscha (Chinook salmon): 112239834
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Entry
112239834 CDS
T05605
Name
(RefSeq) tumor necrosis factor receptor superfamily member EDAR-like
KO
K05162
tumor necrosis factor receptor superfamily member EDAR
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
112239834
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
otw04050
]
112239834
Cytokine receptors [BR:
otw04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
112239834
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Motif
Pfam:
Death_EDAR
SCIMP
DUF4501
TNFR_c6
RIFIN
Motif
Other DBs
NCBI-GeneID:
112239834
NCBI-ProteinID:
XP_024264007
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All DBs
Position
LG03:57724999..57776172
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AA seq
479 aa
AA seq
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MFQKGSHIEFLCLLLVSCPPCLRSEYSSCGEFEFYNQTFSSCRPCPPCQPGQEPHMNCGY
GTKDENFVCVSCPAGKYSKGKYEICRRHKDCEGLYRATVLTPGTPDSDADCGPCLPGYYI
QENRPRNLYGMVCHSCQNAPRNTKECMLTKVPSVSTSSTTMFPHPHKDATGQGHLATALI
IAMSTIFIMAIAIVLIIMFYILKAKPSGQACCSGQVVKAVEAQTNKQEDKKDVPDNVVIF
SEKDEFDKLKPTPPKTVKSENDASSENEQLLSRSMDSDEEAALERQGAADPNPSLCLLNL
GNKPDLCLLSLGLLDRDKTGSNPTSPINANNISNGNANIINNNNYNKATGIQSRRKKILD
LYARACSVAEGLSPTELPFDCLEKASRMLSSSYSSEAAVVKTWRHLAESFGLKRDEIGGM
SDGLQLFERISTAGYSIPDLLTRLVQIERLDAVESLCSDVLGGGDTHTVPLSSPRCASV
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtttcagaaaggaagtcacatagagttcctctgtttgttgttggtgtcctgtcctccc
tgtctcaggtcagagtacagtagttgtggagagtttgaattctacaaccagaccttcagt
agctgccggccctgtcccccatgccagcctggacaggagccccacatgaactgtggctat
gggactaaggatgagaactttgtgtgtgtgtcttgtcctgcggggaagtactcaaagggg
aagtatgagatctgcaggagacataaggactgtgaaggtctgtaccgcgctacagtactc
acacctgggacaccagacagtgacgcagactgtggaccctgcttacccgggtattacatc
caggagaaccggcccaggaacctgtatgggatggtctgtcactcgtgtcagaacgcaccg
cgcaacactaaagagtgcatgcttaccaaagtccccagtgtctcaaccagcagtactacc
atgttccctcaccctcacaaagacgccacaggacagggtcacctagcaaccgctctcatc
attgccatgtcaaccatcttcatcatggccatcgccatcgtcctcattatcatgttctac
atcctcaaagccaagcccagcggacaggcgtgctgctcaggtcaggtggtgaaggctgtg
gaggcgcagaccaacaaacaggaggacaagaaagatgttccagacaacgttgtaattttc
tctgaaaaggatgaattcgacaaactcaaacctacgcctccgaagacggtgaaaagtgag
aatgatgcatcgtcagagaacgagcagctgttgagtcgtagtatggacagtgatgaggag
gcagcgttggagaggcagggggcggctgatcctaaccccagcctctgtcttctgaacctg
ggcaacaagccggacctctgcctgctctctctggggcttctcgacagggataagactgga
tccaaccccaccagccctatcaacgccaacaacattagcaatggcaatgctaacatcatc
aataacaacaactacaacaaggctacagggattcagagccggaggaagaagatcctggat
ctgtatgctagagcctgcagtgtagccgagggtctgagtcctacagaactaccgtttgac
tgtctggagaaggccagtcggatgctgagctcctcctacagtagcgaggcagccgtggtg
aagacctggagacacctggcagagagctttggcctgaagagggatgagatcggagggatg
agtgacggcctgcagctgtttgaaaggatcagtaccgccggctatagcatcccagacctg
ctcaccagactggtgcagatagagagactggatgctgtggagtcactgtgttctgatgta
ctgggaggaggagacacacacactgttcctctgtcctcaccacgctgtgcaagcgtctga
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