Oncorhynchus tshawytscha (Chinook salmon): 112239867
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Entry
112239867 CDS
T05605
Name
(RefSeq) VPS10 domain-containing receptor SorCS2-like isoform X1
KO
K27082
VPS10 domain-containing receptor SorCS2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112239867
Membrane trafficking [BR:
otw04131
]
Protein recycling
Others
Others
112239867
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD_4
PKD
BNR_6
DUF6786
InlK_D3
Motif
Other DBs
NCBI-GeneID:
112239867
NCBI-ProteinID:
XP_042154392
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All DBs
Position
LG15:complement(30698354..31148773)
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AA seq
1150 aa
AA seq
DB search
MSAIMARNMVPLRPKGTVSAHLCRAVFIASAWMSLMGPVRCDSRSDAHRMLDSGGGIGID
RRDGMFEQDLGDNDMDMESRRFRRALSQEKVSLLSSSFVLKGDATHNQAMVHWTGENSSV
ILILTKYYHVDSSKVLESSLWRSSDYGTTYTKLNLMPGTTIVVSNFYICPTNKKKVILVS
SSINERDQLLFISTDEGSSFQRQPLSFTAETLLFHPKEEDKVLAYCKEGKLYVSMDLGRK
WTLMQERVTKGRIFWSVAGVDVDPDLVHMEMQDTSGGYLYVTCLIQNCSDKTVTAQFLGK
IDHNSLSVQDDYIFVKVTTGNRTKHYVSYQRNEFVQMSFPKYALPKDVHIVSTDESQVFL
ALQEWYQTDSYNLYQSDPQGVYYSVVLENVRSAKQPEESVVIDILEVRGIKGVFLANQKV
DGKVRTLITYNKGRDWEPLAPPTTDMNGKPVNCKSPDCHLHLHLRWADNPYVSGTVHTKD
SAPGLIMGAGNLGSQLVEYKEEMYITADCGKTWRQVFEEEHHILYLDHGGVIVAIKDTSI
PLKILKFSIDEGRTWTIHNFTSTSVFVDGLLSEPGDETLVMTVFGHISYRSDWELVKVDF
RQSFPRQCTEGDYDSWKLTDLQGEKCIMGQERSFRKRKDTAFCIKGRSYTSALTTKPCQC
SEKDFNCDYGFERAQSLKTEGDRCFADFWHDPDSPPDDCHQGHNFESSTGYRKVVSNLCE
GGVNKQQSAKQHTCPLLPPRGLQLGIKGQMLAVAPGDDITFIVHQEQGDTSSTKYQVDLG
DGMRAIYQNLTVTDEPIQHRYEQQGVYRVTVKAENVAGYDQATIYIQVTAPLQEVHLEVV
PIAGINQEVNLTAVVLPFEANLTVFYWWIGDNLQPKMSLGNSLITRFPEEGEVSVTVQAS
NGRSMVQDTKNVHVYDRFQVIPLAFSSNLDRLNPNIPEWREDVGQVVTKILSKITGIPQV
SLVTMVKRGLPTTADLYVLPPESQRDKRSVFVDKRIPAIKQAFNDNNVSFIVRGGLQVLV
TLADPNAGSQGGVAGPGVWALSVIFLISLLATGSFILYKFKSPWLRTEDAYPPLFFRKLP
GRNVYAQMHNEKEQEMTSPVNHSEDTQHIIQGEEFIDDDLDSQTLGNAEGNHSGVVLSIN
SRELHSYLTS
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctataatggcgcgaaacatggtacctctgcgtccgaaaggaacagtttcagcg
cacctgtgccgggctgtgtttatcgcctcggcttggatgtcactgatgggacccgtgcga
tgtgacagccggagcgacgcgcatcgtatgcttgacagcggtggcggtataggcatagac
aggagagacggaatgttcgaacaggacttgggtgataatgatatggacatggaatcccgg
cgcttcaggagagctctatcccaagagaaagtgtccctgctcagcagctcgttcgtgctc
aaaggggatgccactcacaaccaggcgatggttcactggacgggggagaacagcagcgtc
attctcatcctgaccaagtattaccatgtcgactccagcaaggtcctggagagctccctc
tggagatccagtgactatggcaccacctacacaaagctcaacctgatgcctggtacaacc
atcgtggtctctaacttctatatctgccccaccaacaagaaaaaggtgatcctggtgagt
tcgtccattaacgagcgggaccagttgctgttcatcagtacagacgagggctcctctttc
cagcgccagcccctctccttcactgctgagaccctcctcttccaccctaaggaggaggac
aaggtgctggcttactgcaaggagggcaagctctatgtgtccatggatttgggccggaag
tggactctaatgcaggaacgagtaaccaagggcagaatattctggtctgtggctggtgta
gatgtggaccctgacttggtgcatatggagatgcaggacacaagtggagggtacctgtat
gtaacctgtctgatccagaactgctcagacaagaccgtaacggctcagttcctggggaag
attgaccacaactctctctcagtccaggacgactacatatttgtcaaggtgaccacagga
aaccgcaccaagcactacgtctcataccaacggaacgagtttgtccagatgagtttcccg
aaatacgccctaccaaaggacgtccacatagtgagtacggatgagagccaggtgttcctg
gccctgcaggagtggtaccagacagacagctacaacctgtaccagtcggacccgcagggt
gtttactactccgtcgtgctggagaacgtccgtagtgccaagcagccggaggagagcgtt
gttatagacatactggaggtgcgcgggatcaagggggtcttcctggccaatcagaaggtg
gatggcaaagtgcggactctcatcacctataacaaaggccgagactgggaaccgctagct
ccgcctactactgacatgaacggcaaaccggtcaactgcaaatcacctgactgtcacctc
cacctccacctgcgctgggctgacaacccctacgtatcagggaccgttcacaccaaagac
tccgcccccggactcatcatgggcgcaggtaacttgggttcccagctggtggagtataaa
gaagagatgtacatcaccgctgactgtgggaagacctggagacaggtgtttgaggaggag
catcacatcctgtacctggaccatggaggggtcatcgttgccatcaaagacacctccatc
cctctcaaaatactcaagttcagtattgatgagggacgcacctggaccatccacaacttc
acaagcacctcagtgttcgtggacggacttctgagcgagccgggagatgagacattggtc
atgacggtgttcggtcacatcagctatcggtcagactgggagctggtcaaggtggacttc
agacagtcattccccagacaatgtacagagggagactacgactcctggaaactcacagat
ctgcagggagagaagtgcatcatgggtcaggagaggagtttcaggaagaggaaggacact
gcgttctgtatcaaggggaggagctacacctccgccctgactaccaagccctgccagtgc
tccgagaaagacttcaactgtgactatgggtttgaacgtgcccagagcctcaaaacagag
ggagatagatgcttcgctgacttctggcacgacccagactcaccgcctgacgactgtcac
cagggacacaactttgagtccagtactgggtacaggaaggttgtgtccaacttgtgtgaa
gggggagtgaacaagcagcagagcgccaagcagcacacctgtcctctgctgccgcccaga
ggcctccagctgggcatcaaaggacagatgctggctgtggcgcctggtgatgacatcacc
ttcattgtccaccaggagcagggtgacaccagcagcactaagtaccaggtggatctgggg
gacgggatgagggccatctaccagaatctgacggtgacagacgaacccatccagcaccgc
tacgaacagcagggagtctaccgcgtcaccgtcaaggctgagaacgttgccggatatgac
caggccaccatatatatccaggtcacagcccctctacaggaagttcacctagaagtagtt
cccatcgccgggattaaccaggaagtcaacctgacagctgtggtacttccctttgaggcc
aacctgactgtcttctactggtggataggagacaacctgcagcccaagatgtccctgggg
aacagtctgataacgaggttccctgaggaaggagaggtgtctgtcaccgtccaggcctct
aacggacgctccatggtgcaggacaccaagaacgtccacgtctacgaccgtttccaggtc
atcccccttgccttcagcagtaacctggaccgcctcaacccaaacattccagagtggagg
gaggacgtgggtcaggtggtcaccaagatattgtcaaagatcacaggtatcccccaggtg
tccctggtaaccatggtgaagcggggcctgcccaccacagctgacctgtacgttctccca
ccagagagccagcgtgataagaggagcgtgtttgtggataagcgtatccctgccatcaag
caggccttcaacgacaacaacgttagcttcatcgtacgaggaggtctacaggtgttggtg
acgctagctgacccgaacgcaggttctcagggtggagtggcaggtcctggagtctgggct
ctctctgtcatcttcctcatcagcctcctcgctactggatccttcatcctctacaagttc
aagagtccttggcttaggactgaggatgcctatcctccgctgtttttcagaaagctgccc
ggccggaacgtgtacgcccagatgcacaatgagaaggagcaggagatgaccagccctgtc
aatcacagtgaggacacgcagcacatcatccagggggaggagtttattgacgacgacctg
gactcacagactctaggtaacgcagaaggtaaccactcgggcgtggtgctgagcatcaac
tccagagagctgcacagctacctgaccagctga
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