Oncorhynchus tshawytscha (Chinook salmon): 112240016
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Entry
112240016 CDS
T05605
Name
(RefSeq) polyadenylate-binding protein 1A isoform X1
KO
K13126
polyadenylate-binding protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112240016
09123 Folding, sorting and degradation
03018 RNA degradation
112240016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112240016
03041 Spliceosome [BR:
otw03041
]
112240016
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112240016
mRNA cycle factors
Stress granule specific factors
112240016
Spliceosome [BR:
otw03041
]
Complex C
Other components
Complex C specific factors
112240016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RBD_RDR6
RRM_7
RRM_5
YflT
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
112240016
NCBI-ProteinID:
XP_024264163
LinkDB
All DBs
Position
Unknown
AA seq
632 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDITEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLRELFGKYVPGPALSIRVMTDDSGKSRGFGFVSF
ERHEDAQRAVDEMNGKDFNGRQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYV
KNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV
ATKPLYVALAQRKEERQAHLTNQYMQRMATVRPVPNPVLNPYQPAPPSGYFMAAIPQTQN
RAAYYSTNQLAQLRPGPRWATQGVRPQHFQNMPNAMRPSAPRPQTFGAMRPSSSQVPRMM
AGQRMATQALGQRPAGAAAAAAPVRMPQYKYAAGVRNPQQHMASQPQVPMQQPAVHVQGQ
EPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPES
LRSKVDEAVAVLQAHQAKESAQKPTNPAGVPS
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaagcgcccccagttacccgatggcctccctctacgtgggcgacctgcaccag
gatatcaccgaggccatgctgtacgagaagttcagccccgccgggcccatcctctccatt
cgagtctgcagggacatgatcacccgtcgatccctcggatatgcctacgttaacttccaa
caaccagccgatgctgaacgtgccctggacaccatgaacttcgacgtcatcaaagggaga
cctctgcgtatcatgtggtctcagcgtgacccttccctgaggaagagtggggtgggcaac
atcttcatcaagaacctggacaagtccattgataacaaggccctctatgacaccttctca
gcgttcggaaacatcctatcgtgcaaggtggtttgtgatgagaatggctcaaagggctat
ggctttgtgcattttgagacccaggaggcggctgaaagagccattgagaaaatgaacggc
atgctgctcaatgacagaaaagtgttcgtcggacgcttcaaatcccgcaaagagcgcgag
gctgagcttggagccagagccagagagttcaccaacgtgtacatcaagaacttcggagag
gacatggacgacgagaagctgagggagctgttcgggaaatatgttccaggaccggccctg
agcatcagggtgatgacggacgacagcgggaagtcccgggggttcggcttcgtcagcttt
gagaggcacgaggatgctcagagggctgtagacgagatgaacgggaaggattttaacggc
cgccaggtctacgtgggccgagcccagaagaagggagagcgccagacggagttgaaacgc
aagtttgaacagatgaagcaggaccgtatgacccgctaccagggggtcaacctgtacgtc
aagaatctggacgatggcctcgacgacgagcgtctgaggaaggagttctctcctttcggt
accatcaccagcgccaaggtgatgatggaaggtggtcgcagcaagggcttcggtttcgtg
tgcttctcctccccggaggaggccaccaaggccgtgactgagatgaacgggcgcatcgtg
gccaccaagcctctgtacgtggcgctggcccagaggaaagaggagcgccaggctcacctc
accaaccagtacatgcagaggatggccaccgtccggcccgtacccaacccagtcctcaac
ccctaccagcctgcccctccctccgggtacttcatggctgccatcccccagactcagaac
cgcgctgcctactactccaccaatcagctggctcagctgagaccaggcccacgctgggcc
acccagggtgtccgaccacaacacttccagaacatgcccaacgccatgcgtccgtccgcc
cccaggccgcagaccttcggtgccatgaggccctcgtcctcccaggtgccacgcatgatg
gccggccagagaatggccacccaggccctgggccagcgtcctgccggtgcggcggctgct
gcagccccggtgaggatgcctcagtacaagtatgcagcaggcgtgaggaacccccagcag
cacatggccagccagccccaggtgcccatgcagcagccggctgtccacgtccagggacag
gagcctctgacggcctccatgctggcggctgctcctcctcaggaacagaagcagatgttg
ggcgagcgtctgttccctctcatccaaaacatgcaccccagtctggctggaaagatcacc
ggcatgctgttggagatagacaactccgagttgctccacatgctggagtctcccgagtct
ctccgctccaaggtggacgaggctgttgctgtgctgcaggctcaccaggccaaggagtcc
gcccagaagcccaccaaccccgccggagtccccagctaa
DBGET
integrated database retrieval system
